LOC103037553 (LOC107753862,LOC107597184)


Basic Information

Item Value
gene id LOC103037553
gene name LOC107753862,LOC107597184
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9995709 ~ 10022964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55733
GTCCAGCTCGGGAATATTGAGAGAAAATCCGCGGACCCAGAGAACAAACGGGATTTTACCTTCTCCAGGACCTCGGGGAGACCATGCTGCACCGCGGGGCTCTCCGCGCGACCCTGCTGGCGCTCCTACTGCACATCTGCTCCGCACAGAGGGGCCCGCCTGGTCCAAGAGGGCCACCCGGCCCCCCAGGACTTGTTGGCTTTTCTGGTGTTGATGGGATTGATggAGAACGGGGACCGGGGCCTGGTCCAGTTGGCCTCCCGGGCCCAGATGGAGCTAATGGGAAAAACGGGGCTAATGGACTCCCAGGGAATCCAGGAGCAGACGGTTTGACTGGGCCTGTTGGAGAACCTGGTCCAACTGGGCCTATTGGACCCAAAGGTGAGCCTGGAGCTCCCGGACCCAGAGGAAGACCTGGTGTGGGAGAGGATGGAGAAGCTGGTGCGGATGGAGAAGACGGGTTGCCAGGAGAACTGGGAAAAGCTGGACCCCCTGGGAGCCGTGGCCCAAGAGGATCGGTGGGTCTACCAGGACCATCTGGGTCGAGAggtCCCCCAGGCGTTTGGAACGGGGAGGAACTGTGTCCCAATGCCTGTGTTAGTGGACTGTCGGGATACAGTGGACTACCAGGCATGAAGggTCACAAAGGAGTGAAAGGTGAATCCGGTGAGCCAGGAAGACAAGGCCATAAGG
>XM_022670149.1
ATGAGTTTTTAATGGTAACGAGCATCTCAGCAGACGCTTCGGCGGTCCAGCTCGGGAATATTGAGAGAAAATCCGCGGACCCAGAGAACAAACGGGATTTTACCTTCTCCAGGACCTCGGGGAGACCATGCTGCACCGCGGGGCTCTCCGCGCGACCCTGCTGGCGCTCCTACTGCACATCTGCTCCGCACAGAGGGGCCCGCCTGGTCCAAGAGGGCCACCCGGCCCCCCAGGACTTGTTGGCTTTTCTGGTGTTGATGGGATTGATggAGAACGGGGACCGGGGCCTGGTCCAGTTGGCCTCCCGGGCCCAGATGGAGCTAATGGGAAAAACGGGGCTAATGGACTCCCAGGGAATCCAGGAGCAGACGGTTTGACTGGGCCTGTTGGAGAACCTGGTCCAACTGGGCCTATTGGACCCAAAGGTGAGCCTGGAGCTCCCGGACCCAGAGGAAGACCTGGTGTGGGAGAGGATGGAGAAGCTGGTGCGGATGGAGAAGACGGGTTGCCAGGAGAACTGGGAAAAGCTGGACCCCCTGGGAGCCGTGGCCCAAGAGGATCGGTGGGTCTACCAGGACCATCTGGGTCGAGAggtCCCCCAGGCGTTTGGAACGGGGAGGAACTGTGTCCCAATGCCTGTGTTAGTGGACTGTCGGGATACAGTGGACTACCAGGCATGAAGggTCACAAAGGAGTGAAAGGTGAATCCGGTGAGCCAGGAAGACAAGGCCATAAGGGTACGCAGGGTCTGAGGGGAATAACCGGCATCATGGGGCCAAAAGGAGACCGGgGTCTACGAGGGACGGACGGCGACAAGGGTCCACAGGGCATCGTAGGCGCCCCTGGTGACCGAGGACAGAGAGGAAAAGTTGGCGAGGCTGGACCAAAAGGAGCTCAGGGTCCTCGGGGTCTTCAAGGTGTGACAGGTTTCCGTGGACCTAAAGGAGAAGCTGGTTTACCAGCCATGGATGCCCGTGATGGTATCCCAGGAATGCCAGGGGTTAAGGGAATTCCTGGAAAAGTGGGTTCTCCTGGTGATGTTGGTCCTCAAGGCCTGCCAggTGTGCCAGGAATACCAGGGGCAAAGGGCCACAGTGGGCCAAAGGGAAGCAGTGGTGATCCGGGCGTGGCAGGACCGATCGGGAACAACGGAAAAGTTGGTGAACGCGGTGAACAGGGCGAGGTGGGACCAGTAGGACCGAGAGGTGGGCCAggAGAACGTGGAGTAAGGGGTCCGGATGGCCCGCAGGGGCTGCCAGGTCAGAGGGGGCCTAAAGGAAATCTTGGACTACCTGGTCTACCAGGCCCGGCTGGATTCTCTGGTCAGAAAGGTGACAGGGGCGCAGTCGGACTCACTGGTCCAAAAGGCGAGCAGGGAGCACCAGGTGAGGAGGGAACCCCGGGCGATAAAGGAGATGTGGGTGATGAGGGAGAACCGGGCGAGAAAGGATCGACAGGAAAACCAGGTGATGCTGGAAACAAGGGCCCAGAGGGGGGCCGTGGGCAGCAGGGACTGGAGGGTCCACCTGGTGAGCCTGGGCCCCGAGGCATGCAGGGAGACCGTGGGGCACTCGGCTTACCTGGGGCACAAGGACGAGCGgGTCGTGGGCCGACTGACCAGCACATTAAGCAGGTCTGCATGAGAGTAATGCAAGAGCAACTCGCTCAGCTCGCAGCCAGCCTGACCAGGCCAGAGTCCGGAGTCACCGGCCTACAGGGCCCTCCTGGTCCTCCTGGACCCCCTGGATCTACTGGACAAAACGGCTTTCCAGGACATCCGGGAGCCAGAGGGCTGCCAGGGCTTAAAGGACCTCCTGGTCTGCTGGGAAGAAAAGGACCTAAAGGTGACACAGGAGACAGGGGAGACAGAGGACCGACAGAACAGGGGCCTAAAGGGGTACCTGGACCTCCAGGAATGCCAGGTGAGCCTGGACGGGCAGCGTATGGCAGCGAGGGTCGGGAAGGTATGCGAGGGCCTCGAGGTGTACCAGGAACGCCTGGAGTTCCAGGACCTCCTGGGCCTCCTGGCCCTAACGGATACTGCGAGTCCTCTCAGTGTGTTCTCCAGGCCGCTGCCGGAGTATCTGCCAAAGAGTCCAACATGAAGGGCCCAGACGACTATTAAAAGAACACATAATTATAGGCTGGCTGCAAACTGCCATCCAGAAGCTGCAGCCCATCACACACTCAGAGACTAATGGAGGAGCCTTCAGCAACTGTGACTTTTGTCTGTACAGCAGTTCTGTTCTCTGTAACGATAAACCAGGTACGATTCTTTGGCTTGCAGAAATGTGCATTTTGATAAATCGAGGACTGTTTACAGAAACGGACGACAGACGATTCCTGCTGACCCCTCAGTTCAGTTCTGAGAAATGCTCACACAAGTCTCAGTACATCTACTCTCAGGTTTCTGAAGCTGAAGTGTCAAATAAAACCAGATGCTGTCCTCCATACTAAACTCATGTATAGGGACATTAGTCCTAATGAAGGGTTTGTACATGATTTAAATGCATAGAACTAAATGTAAATACAGTGACCTCAAACTGCTCAAATACTTCATATTCTCATCTTCTACACTGCCTCATTTCCAACAATCCAAACTCAATGCAAATTTGTTACACTCAACTTCTTAATTACACTGACGCAGAAACTGTTTCACAGCGTTTTCTTCTGCGTGCTCATTTCTTTGCCCGATTTTCCCACTGATGAAGACGTTCTGCTATTGTGGAGTTACGTTTAATGTGTGTGGTTTGGTGAAATGAGAATTAGCTACAacttttctattatttattttataaaagagGTTCAATGTTACAGATACGATTGTGAAAAAGGGGTAAATAAAAGATTTTGATAAA

Function

NR:

description
PREDICTED: collagen alpha-1(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55733 False 693 TUCP 0.61 12 9995753 10005398
XM_022670149.1 True 2858 mRNA 0.55 31 9995709 10022964

Neighbor

gene id symbol gene type direction distance location
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 16125 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 24961 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 27549 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 42428 9946192 ~ 9953281 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding upstream 282201 9426169 ~ 9713508 (+)
lgsn NA coding downstream 6693 10029657 ~ 10035243 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 258544 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 269373 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 695776 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 710330 10733294 ~ 10743346 (+)
G41436 NA non-coding upstream 2487 9989714 ~ 9993222 (+)
G41410 NA non-coding upstream 114419 9881055 ~ 9881290 (+)
G41401 NA non-coding upstream 120432 9875060 ~ 9875277 (+)
G41334 NA non-coding upstream 223938 9771540 ~ 9771771 (+)
G41328 NA non-coding upstream 232842 9762466 ~ 9762867 (+)
G41465 NA non-coding downstream 61026 10083990 ~ 10088084 (+)
G41477 NA non-coding downstream 105588 10128552 ~ 10130745 (+)
G41507 NA non-coding downstream 195388 10218352 ~ 10226963 (+)
G41511 LOC108438683,LOC108270806 non-coding downstream 205887 10228851 ~ 10231948 (+)
LOC107197699 NA non-coding downstream 280774 10303738 ~ 10329108 (+)
LOC103022991 NA other upstream 1060223 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1232917 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1471396 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2168795 7826523 ~ 7826914 (+)
G40756 NA other upstream 3462035 6533365 ~ 6533674 (+)
G41828 LOC108429549,LOC108271147 other downstream 1548262 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1646483 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1730923 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2311380 12334344 ~ 12340913 (+)
G42068 NA other downstream 2609852 12632816 ~ 12633429 (+)

Expression


Co-expression Network