G46018


Basic Information

Item Value
gene id G46018
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8198232 ~ 8276329 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52339
GGGCCGTCTGTGCAGCAGGCTCTCATTGAGAACTATGGCTAGATGAGCCGCCACTGCACCACAGTGTGGGACGGCTGCCAAAATGAACTCTGCAACCTCTTTGGTGTGCCCTTTGGGTCAGCTTACACAGCAGCGCACCGTTCTGCTGAAATCCCTGAATTAATGCAGAGAGGGAAGAAGAGGGGGAGGAATGACTCAAGCGAAAAAGGTAGTACACAAAATGGTGCTCACTTTTATTTGCTGTGTCAGAGTGGGGCAGTCCAACACAAGGGGGTTTACAAATCGTGGTGTAATGTGAGAATGTTTGGGGGGAGGGGTCATGTCCATGTCACGTGTTCACTTTTATGTAGTTAGTGGTCGTCAAACAGGCTTGAATCCAATAGTGCTCCCCGTTCCTTTATGTTTGGGGGTGTTTCAGTCTCTGCTTTTGTGTCAGCTCTTCACTTTTTGACCTTGCCCTGAGCGGCCACAGCCTCCATGGCTTTGCGCACTGTTTCCTCATCTCCCAGGAACTGCATGGGTTTGATGGGCTTCAGGTCCTTATCCAGCTCATAGACGATGGGAATGCCAGTGGGCAGGTTGAGCTCCATGATGGCTGCATCTGACATGCTGTCTAAGTGCTTGACGATACCACGCAGGCTGTTGCCGTGGGCTGCGATTATGACGTTTTTGATATATATATATATATATACACACACACACACATTTTATACATTCATATACATTCATATATATATATATATATATATATAAACATCTGATCTCTTTGTCTTACCTCACTGATGATCTTGTGGTATGGATGGTCCTTATCCATAGTAGGAGGGGGAATATCGAATGATCTGCGCCAGATCTTGACCTGCTCTTCTCCGTGCTTGGCTGCTGTCTCTGCCTTGTTCAGACCAGTCAGACCACCATAGTGACGTTCATTCAGACGCCAGGTGCGCACTACGGGCAGCCACATCTGGTCTGTGATCTCCATGATGGTCCAAAGAGTCTTGATAGCACGCTTCAGAACGGAGGTGTAGCACACATCAAACTTCATGCCTGCATCTTTGATGGCCTGTGCACCACGCTTTGCTTCCTCCAGACCCTTTTCACTGAGGTCTGCATCAAACCACCCACAGAAACGGTTCTCCTGATTCCAGGTGCTCTCGCCGTGGCGTACAATCACTAGACGATGAGCAGCAGCCATTTTAAAAGAATTTGGGTTTTACTGTAGTGTTTTCCAGACTAAGCCCACCAAACACAGCCCTCCTTGTTGTTGTGCACACACTCTGTGACAGACAGT
>TU52340
GGGCCGTCTGTGCAGCAGGCTCTCATTGAGAACTATGGCTAGATGAGCCGCCACTGCACCACAGTGTGGGACGGCTGCCAAAATGAACTCTGCAACCTCTTTGGTGTGCCCTTTGGGTCAGCTTACACAGCAGCGCACCGTTCTGCTGAAATCCCTGAATTAATGCAGAGAGGGAAGAAGAGGGGGAGGAATGACTCAAGCGAAAAAGGTAGTACACAAAATGGTGCTCACTTTTATTTGCTGTGTCAGAGTGGGGCAGTCCAACACAAGGGGGTTTACAAATCGTGGTGTAATGTGAGAATGTTTGGGGGGAGGGGTCATGTCCATGTCACGTGTTCACTTTTATGTAGTTAGTGGTCGTCAAACAGGCTTGAATCCAATAGTGCTCCCCGTTCCTTTATGTTTGGGGGTGTTTCAGTCTCTGCTTTTGTGTCAGCTCTTCACTTTTTGACCTTGCCTCACTGATGATCTTGTGGTATGGATGGTCCTTATCCATAGTAGGAGGGGGAATATCGAATGATCTGCGCCAGATCTTGACCTGCTCTTCTCCGTGCTTGGCTGCTGTCTCTGCCTTGTTCAGACCAGTCAGACCACCATAGTGACGTTCATTCAGACGCCAGGTGCGCACTACGGGCAGCCACATCTGGTCTGTGATCTCCATGATGGTCCAAAGAGTCTTGATAGCACGCTTCAGAACGGAGGTGTAGCACACATCAAACTTCATGCCTGCATCTTTGATGGCCTGTGCACCACGCTTTGCTTCCTCCAGACCCTTTTCACTGAGGTCTGCATCAAACCACCCACAGAAACGGTTCTCCTGATTCCAGGTGCTCTCGCCGTGGCGTACAATCACTAGACGATGAGCAGCAGCCATTTTAAAAGAATTTGGGTTTTACTGTAGTGTTTTCCAGACTAAGCCCACCAAACACAGCCCTCCTTGTTGTTGTGCACACACTCTGTGACAGACAGT
>TU52341
CCCACTCTGATACACAAAATGGTGCTCACTTTTATTTGCTGTGTCAGAGTGGGGCAGTCCAACACAAGGGGGTTTACAAATCGTGGTGTAATGTGAGAATGTTTGGGGGGAGGGGTCATGTCCATGTCACGTGTTCACTTTTATGTAGTTAGTGGTCGTCAAACAGGCTTGAATCCAATAGTGCTCCCCGTTCCTTTATGTTTGGGGGTGTTTCAGTCTCTGCTTTTGTGTCAGCTCTTCACTTTTTGACCTTGCCCTGAGCGGCCACAGCCTCCATGGCTTTGCGCACTGTTTCCTCATCTCCCAGGAACTGCATGGGTTTGATGGGCTTCAGGTCCTTATCCAGCTCATAGACGATGGGAATGCCAGTGGGCAGGTTGAGCTCCATGATGGTCCAAAGAGTCTTGATAGCACGCTTCAGAACGGAGGTGTAGCACACATCAAACTTCATGCCTGCATCTTTGATGGCCTGTGCACCACGCTTTGCTTCCTCCAGACCCTTTTCACTGAGGTCTGCATCAAACCACCCACAGAAACGGTTCTCCTGATTCCAGGTGCTCTCGCCGTGGCGTACAATCACTAGACGATGAGCAGCAGCCATTTTAAAAGAATTTGGGTTTTACTGTAGTGTTTTCCAGACTAAGCCCACCAAACACAGCCCTCCTTGTTGTTGTGCACACACTCTGTGACAGACAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU52339 False 1288 lncRNA 0.48 2 8198232 8199903
TU52340 False 970 lncRNA 0.50 2 8198232 8199903
TU52341 True 697 lncRNA 0.49 3 8198232 8276329

Neighbor

gene id symbol gene type direction distance location
CI01000006_08194421_08196816 NA coding downstream 1347 8194131 ~ 8196885 (-)
CI01000006_08153453_08156753 RPL17P7, RPL17P6, RL17, RPL17.L, RPL17.S, RPL17, RPL17-C18ORF32, RPL17-PS9 coding downstream 40626 8153442 ~ 8157606 (-)
CI01000006_08149223_08150992 NKX6.1, NKX6-1 coding downstream 47240 8148493 ~ 8150992 (-)
CI01000006_08080632_08085336 NA coding downstream 112369 8080393 ~ 8085863 (-)
CI01000006_08020880_08024499 FAM175A coding downstream 173733 8020697 ~ 8024499 (-)
CI01000006_08437493_08455451 NA coding upstream 160564 8436893 ~ 8455741 (-)
CI01000006_08458656_08461261 NA coding upstream 182223 8458552 ~ 8461452 (-)
CI01000006_08474273_08474602 RIMBP3B coding upstream 197658 8473987 ~ 8474602 (-)
CI01000006_08512030_08512578 NA coding upstream 234985 8511314 ~ 8512578 (-)
CI01000006_08557710_08600107 VAV2 coding upstream 280522 8556851 ~ 8600107 (-)
G45986 NA non-coding downstream 117976 8080018 ~ 8080256 (-)
G45985 NA non-coding downstream 118536 8079468 ~ 8079696 (-)
G45970 NA non-coding downstream 158283 8039680 ~ 8039949 (-)
G45960 NA non-coding downstream 267538 7930402 ~ 7930694 (-)
G45928 NA non-coding downstream 365636 7831145 ~ 7832596 (-)
G46106 NA non-coding upstream 132633 8408962 ~ 8835381 (-)
G46089 NA non-coding upstream 204920 8481249 ~ 8498802 (-)
G46199 NA non-coding upstream 700342 8976671 ~ 8976871 (-)
G46102 NA non-coding upstream 722764 8999093 ~ 9008209 (-)
G46076 NA non-coding upstream 737802 9014131 ~ 9016971 (-)
CI01000006_07500281_07507754 NA other downstream 687276 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 1221360 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 3636164 4559509 ~ 4562068 (-)
G43549 NA other downstream 3842804 4352510 ~ 4355428 (-)
G43102 NA other downstream 5264248 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 2206527 10453613 ~ 10484006 (-)
G47658 NA other upstream 2754582 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 3374034 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 4058080 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 4074430 12569205 ~ 12582487 (-)

Expression


Co-expression Network