G41511 (LOC108438683,LOC108270806)


Basic Information

Item Value
gene id G41511
gene name LOC108438683,LOC108270806
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10228851 ~ 10231948 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55814
CGTAGCAGtgccacccagagagagatGGCCCATCTGCTGGGTCAGAGGAGCCAACATGGAGGACGGCTGTAGTGGCATGGGGTGCTCCATAGGGGGCGACAGTACAGCTCCcGGGTGCTGCATAATGTAAGGCTGATGTGTCATCCAGGAGGGATTCTGAAcCGGGTAGGTGGAGACGGGTGAGATGTAAGGGGTCACAGCAGTCTGGGGCATTATTCTGTTGCCCATGCTGTAGGGAGAGGCGTAGtacctgaaagggttaaaataatcCATATGTTACACCTTAAAATTTAGGTTCAATCACAAAAATAACAACAGACattctacacactacacacggGCATTCTGATTGGTTAATAGTTTGATCACCTGAGCCAGAAGAGTAAATGAAAGTGGAGAGGAGAGCTCTCATTTAAACATCCCTTTATCTGTTTATTGCAAATTAACCTAATAatgctgatgtctgtaagtttagGATTttgggccctctctggtgagaatgggtaattgagcgagcatgcggaagaatcctTTTAAACTGGGCAGGTGTAATtgcgattccaggttatgttcagtcagagtgagagagggagcgcactcagtcagaaacttcacttcaactacacactttgtttttactatgagtgaatgaattactgagctctgagtttccccttctgaagtctccattgctccaccagccgctcacattcagtaaaactgagccagatcctcttttagaggctgtacatgtgacataagtacgtaaagacacgTGACGTGGTTAGAAGAACTCCCACGAAAAGTGAcacgacaccccagtttttaaaaatgaatatattaggcttagcagggatggtcgttccagcacactggtagcattaaag

Function

NR:

description
PREDICTED: RNA-binding motif, single-stranded-interacting protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55814 True 887 lncRNA 0.46 3 10228851 10231948

Neighbor

gene id symbol gene type direction distance location
lgsn NA coding upstream 193608 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 249267 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 258103 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 260691 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 275570 9946192 ~ 9953281 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 49560 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 60389 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 486792 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 501346 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 523261 10755209 ~ 10755281 (+)
G41507 NA non-coding upstream 1888 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 98106 10128552 ~ 10130745 (+)
G41465 NA non-coding upstream 140767 10083990 ~ 10088084 (+)
G41436 NA non-coding upstream 235629 9989714 ~ 9993222 (+)
G41410 NA non-coding upstream 347561 9881055 ~ 9881290 (+)
LOC107197699 NA non-coding downstream 71790 10303738 ~ 10329108 (+)
G41597 NA non-coding downstream 230942 10462890 ~ 10491901 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding downstream 303817 10535765 ~ 10585949 (+)
G41682 NA non-coding downstream 632765 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 635036 10866984 ~ 10867501 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 205887 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1293365 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1466059 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1704538 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2401937 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1339278 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1437499 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1521939 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2102396 12334344 ~ 12340913 (+)
G42068 NA other downstream 2400868 12632816 ~ 12633429 (+)

Expression


Co-expression Network