LOC107197699


Basic Information

Item Value
gene id LOC107197699
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10303738 ~ 10329108 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55896
CCTCTGCTGCAGGACAGCAGCACACGCGCACGTGCCCGGTGGAGCCCCTGTAAGATCACAGCTCCTCCCTGATGCAGCGTCTCTGTGAGAGACCGGAGGACCATTCACTGGAACAAAACCATCTGACCAGCCCGCACCCCCCACCCCATCCGACTCCCACCATCAACGGAAGCGTTTAGTGCCATGTGTGCCCCCAGAGAGGGGGCCGCGGGAAGggggagaaaaaagaagaagaagacgacgACAAGCAAGAGGCTGCAGCTTGTGTGCCAGTGGGGACAAAGAGGCTGCTGCCAGTTGCCACGGACCAccccctccaccctccacaaaccCCCAAGCCCACCCCCTCCACCCCCCAGATGCTGAAGATTGGAGCCCAGAACGAAAGGGTTGTGTGCGAGGAAGCCATCTTGATGGAGAAGCTGGCTGCCTGCTTCCTAAAATGGCTGTGTTGGCATGAGAACCAAGTTGATGATACCCTGCTTCGCTGTGCAGTTCCATTGTTCCTGACCCAACGTCTTCCATCAGTTCCATCCGTTCCACACCTTCCATCAATTTGACCTGAATGAAGATGACTGGATTGGCCACCACAACCTGCTCAAACCTATTGGACAatcaaatgaactgaactgcagTGCAAGTACTATTAGAGGAATGACATAAGACGAATTTGAGCAAATCTTGGTACTTGAACCTAATGACAatctatataaaaacatatgcaTGCTTCAAGCTGCATATCGTTGTTCTACAAAGGCCAGGTGCGTTCAGACTGCAGAGCCCCGACCGACGAGAATGTGCCTTAATGTGTGAACTGTTTACAATGAAAGAGTAGTGTGCGGCTATTAATAGAGTAGACGATACTGTACAGTGAGTGCTAATGAACGTGTGAGTCATTTCTGTTCCgcttctgttttaaatgtgcttttaatGTCTCTCTGTGACTAAATGAACTGTACGTCCTCCCATGATGAACATTATATCCATTAAAACTTGTCTTTCCTGTGAGGGATCTCAAGTCATACAGGAAATGGTGCTCTTTGCTTAATAATCAGGATATTACTCGTATTACTCTGGCACGTGTTAAATACCCAAATGAGGAGCTGAAATCTCATTCTCTGTGTGTTAAACAGCAATGTATGAAATGGAATAAATAAAGGTGTGCAATATGAAAGT
>XR_001518719.2
gggagagagagagagggagggatgaaGAGATGAAGGGATGGAAGGACCGATGATCCAGCCCTAAAGACGACGGACTGGCAGCACAGAGCGAAGACTGGCTGGCCTTCTGTTAAGTGTAGCTTAGAGCTGTTTTCCATGATTTcccagtgctggagataaaCTGGCAGCTTCTGCTCTTTCTGGATCTGACTGGATCTGTAAGAGTCTGGAAAAAGCTCCGGACTGATAAAGGGAAATGCTCGGTGCTGCTTTTAAccatgaagatgatgatgaaggtggtggaggtgtgtatgatgatgatgatgatgaagaagtgCTGAACATAGTCTCCATGGCCTCAAACACATGGAGCTTCGACATGTGCCTAACATACGACCACCTGCCCACCTCTCCGTCTGACCAGAACACAGAAGAGCACGGAGGACATAAAAAGTGCCTGTGTGAGCTGCTCCATTATGATTGCACTGTGAAAGGAGGTTGATGCTATCTTTGGTTATCTAGCTGTATGAGTGTTTCTATGCCGTCATAAAGCTAGATAACCGAAAGTAGGAACGGCCTCCTCTGCTGCAGGACAGCAGCACACGCGCACGTGCCCGGTGGAGCCCCTGTAAGATCACAGCTCCTCCCTGATGCAGCGTCTCTGTGAGAGACCGGAGGACCATTCACTGGAACAAAACCATCTGACCAGCCCGCACCCCCCACCCCATCCGACTCCCACCATCAACGGAAGCGTTTAGTGCCATGTGTGCCCCCAGAGAGGGGGCCGCGGGAAGggggagaaaaaagaagaagaagacgacgACAAGCAAGAGGCTGCAGCTTGTGTGCCAGTGGGGACAAAGAGGCTGCTGCCAGTTGCCACGGACCAccccctccaccctccacaaaccCCCAAGCCCACCCCCTCCACCCCCCAGATGCTGAAGATTGGAGCCCAGAACGAAAGGGTTGTGTGCGAGGAAGCCATCTTGATGGAGAAGCTGGCTGCCTGCTTCCTAAAATGGCTGTGTTGGCATGAGAACCAAGTTGATGATACCCTGCTTCGCTGTGCAGTTCCATTGTTCCTGACCCAACGTCTTCCATCAGTTCCATCCGTTCCACACCTTCCATCAATTTGACCTGAATGAAGATGACTGGATTGGCCACCACAACCTGCTCAAACCTATTGGACAatcaaatgaactgaactgcagTGCAAGTACTATTAGAGGAATGACATAAGACGAATTTGAGCAAATCTTGGTACTTGAACCTAATGACAatctatataaaaacatatgcaTGCTTCAAGCTGCATATCGTTGTTCTACAAAGGCCAGGTGCGTTCAGACTGCAGAGCCCCGACCGACGAGAATGTGCCTTAATGTGTGAACTGTTTACAATGAAAGAGTAGTGTGCGGCTATTAATAGAGTAGACGATACTGTACAGTGAGTGCTAATGAACGTGTGAGTCATTTCTGTTCCgcttctgttttaaatgtgcttttaatGTCTCTCTGTGACTAAATGAACTGTACGTCCTCCCATGATGAACATTATATCCATTAAAACTTGTCTTTCCTGTGAGGGATCTCAAGTCATACAGGAAATGGTGCTCTTTGCTTAATAATCAGGATATTACTCGTATTACTCTGGCACGTGTTAAATACCCAAATGAGGAGCTGAAATCTCATTCTCTGTGTGTTAAACAGCAATGTATGAAATGGAATAAATAAAGGTGTGCAATATGAAAGTGA
>XR_002649932.1
cacagggagagagagagagggagggatgaaGAGATGAAGGGATGGAAGGACCGATGATCCAGCCCTAAAGACGACGGACTGGCAGCACAGAGCGAAGACTGGCTGGCCTTCTGTTAAGTGTAGCTTAGAGCTGTTTTCCATGATTTcccagtgctggagataaaCTGGCAGCTTCTGCTCTTTCTGGATCTGACTGGATCTGTAAGAGTCTGGAAAAAGCTCCGGACTGATAAAGGGAAATGCTCGGTGCTGCTTTTAAccatgaagatgatgatgaaggtggtggaggtgtgtatgatgatgatgatgatgaagaagtgCTGAACATAGTCTCCATGGCCTCAAACACATGGAGCTTCGACATGTGCCTAACATACGACCACCTGCCCACCTCTCCGTCTGACCAGAACACAGAAGAGCACGGAGGACATAAAAAGTGCCTGTGTGAGCTGCTCCATTATGATTGCACTGTGAAAGGAGGTTGATGCTATCTTTGGTTATCTAGCTGTATGAGTGTTTCTATGCCGTCATAAAGCTAGATAACCGAAAGTAGGAACGGCCTCCTCTGCTGCAGGACAGCAGCACACGCGCACGTGCCCGGTGGAGCCCCTGTAAGATCACAGCTCCTCCCTGATGCAGCGTCTCTGTGAGAGACCGGAGGACCATTCACTGGAACAAAACCATCTGACCAGCCCGCACCCCCCACCCCATCCGACTCCCACCATCAACGGAAGCGTTTAGTGCCATGTGTGCCCCCAGAGAGGGGGCCGCGGGAAGggggagaaaaaagaagaagaagacgacgACAAGCAAGAGGCTGCAGCTTGTGTGCCAGTGGGGACAAAGAGGCTGCTGCCAGTTGCCACGGACCAccccctccaccctccacaaaccCCCAAGCCCACCCCCTCCACCCCCCAGATGCTGAAGATTGGAGCCCAGAACGAAAGGGTTGTGTGCGAGGAAGCCATCTTGATGGAGAAGCTGGCTGCCTGCTTCCTAAAATGGCTGTGTTGGCATGAGTGAGGTGGGGCGGATTTGGAAATTGCTGTTATAATATTAACAGAACCAAGTTGATGATACCCTGCTTCGCTGTGCAGTTCCATTGTTCCTGACCCAACGTCTTCCATCAGTTCCATCCGTTCCACACCTTCCATCAATTTGACCTGAATGAAGATGACTGGATTGGCCACCACAACCTGCTCAAACCTATTGGACAatcaaatgaactgaactgcagTGCAAGTACTATTAGAGGAATGACATAAGACGAATTTGAGCAAATCTTGGTACTTGAACCTAATGACAatctatataaaaacatatgcaTGCTTCAAGCTGCATATCGTTGTTCTACAAAGGCCAGGTGCGTTCAGACTGCAGAGCCCCGACCGACGAGAATGTGCCTTAATGTGTGAACTGTTTACAATGAAAGAGTAGTGTGCGGCTATTAATAGAGTAGACGATACTGTACAGTGAGTGCTAATGAACGTGTGAGTCATTTCTGTTCCgcttctgttttaaatgtgcttttaatGTCTCTCTGTGACTAAATGAACTGTACGTCCTCCCATGATGAACATTATATCCATTAAAACTTGTCTTTCCTGTGAGGGATCTCAAGTCATACAGGAAATGGTGCTCTTTGCTTAATAATCAGGATATTACTCGTATTACTCTGGCACGTGTTAAATACCCAAATGAGGAGCTGAAATCTCATTCTCTGTGTGTTAAACAGCAATGTATGAAATGGAATAAATAAAGGTGTGCAATATGAAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55896 False 1176 lncRNA 0.48 4 10305904 10329106
XR_001518719.2 False 1736 lncRNA 0.48 5 10303742 10329108
XR_002649932.1 True 1783 lncRNA 0.48 6 10303738 10329108

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_1 NA coding upstream 11329 10292337 ~ 10292409 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 14122 10281508 ~ 10289616 (+)
lgsn NA coding upstream 268495 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 324154 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 332990 9968411 ~ 9970748 (+)
LOC103033216 LOC108428499 coding downstream 389632 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 404186 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 426101 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 427261 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 540514 10869622 ~ 10934882 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 71790 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 76775 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 172993 10128552 ~ 10130745 (+)
G41465 NA non-coding upstream 215654 10083990 ~ 10088084 (+)
G41436 NA non-coding upstream 310516 9989714 ~ 9993222 (+)
G41597 NA non-coding downstream 133782 10462890 ~ 10491901 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding downstream 206657 10535765 ~ 10585949 (+)
G41682 NA non-coding downstream 535605 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 537876 10866984 ~ 10867501 (+)
G41689 NA non-coding downstream 539024 10868132 ~ 10868418 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 280774 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1368252 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1540946 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1779425 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2476824 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1242118 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1340339 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1424779 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2005236 12334344 ~ 12340913 (+)
G42068 NA other downstream 2303708 12632816 ~ 12633429 (+)

Expression


Co-expression Network