G41597


Basic Information

Item Value
gene id G41597
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10462890 ~ 10491901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55941
GATCTTTATTTTTGTAGAATCTATAATCTGCGTATTGAcatcaattaaataataaaggagaaaaaataaaaaaaggcaaaatctttaaattacATGTATGACAATCCACAAAAATAGgccttattttatattaacgTCATTGTCCTGTCTCAGTTATGTACTACAGTCTTTCAAACCGTACGTCTCTGTTACTAAGGTACTAGCTGCTGCAGTTGTTGGAATTGGGCGGAGTCCAAAATGTCCAGCAATGTCCAAAAAGGCTTGATGTGAGTGAAACTCAAAGATGGACCCCCCTTATCTtctcagaggaggaggagaaaaagagacaaaagcaGACATTCAGCCCTTTGGAGCAAAGCATCCGTCATCTAGAACCTCAGGTTCCTGTTCTGAACAGGAGTTTACACTAGTCTGACTACACCAGCACTGACTGTGTGCACCAATACACTGTGCACATGCTGTGAGCTGGAAGCATGGAAGAGTAAGGATGGGCCGGTTTGAGGGGGGAAGGGGATTTGAGGGGTGGATTGGGAGTAATCTAGGACTAGCTTGAGATATATTGAccttttgaataaaaaaaacggcCCAATCACAATCATTGTAAAAGAAATACTCCAGCTAATCTGTATGAGCCAGCTCTGTATcacactgtgcaaaaaaaaacacactctgaaaataaaggtgctacagaGGGTTTAAAAGAAATGCCATATAAGATACACTTTTGTGAAAGTGTGAaggatgtgagtgtgtgtgtgtgtgtgtgtgtaaagagccTTTTTAAAATTTGCACAAGCTGATGGAAAGATTCTTCACACTCATGACTTTTACAAAAGTGGGTCTTTTATGGCATTCGTTTTTGTAGCAGCTCTTCACACTGTGCACAACATTTACCACTGCTGTACAATAATGTTGAAAAGATTCAGTATTTGTAGAATACAGCCTGTActtccattttattttttatttttttatgtgagaaCTTGTAAACTATAGTAGTTTATAGTTTTGAACTGGTGTACAAACTACTGCATCTCAACAAATTagcatatcattaaaaagttactttatttcattaattcagttcaaaatgtgaaactcataataTAGAgacgtattacacacagagtgatctattttaagcgtttatttcttttattgttgattgtggcttcagccaattaaaacccaaaaatcagtgtctcagaagattagaatattaaataagaccaattggtacttttggcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatccgcatctccataaaagttgtcagcagagaggaGCAGGAAGTGCTTCATTTGCAAGTCTAGTGtgaagtgactttttttttttagatgtaaagTTGTGCCAAATTTTATTTCTCAGttatttcttaaattattaaatgcaAAATCCAAGTACAAATTTTATTCTACAAGTTCTAAGATCAGGTTCTATAGGTGACATAAGTATTTGAATCTGAATTTTGTATGTTTGAATTAACTATTTTCACTAAAAAA
>TU55943
attatataagaccaattggtacgtttggcagtgtgggcagtgtgccaagtcctccataaaagttgtcagcagagaggaGCAGGAAGTGCTTCATTTGCAAGTCTAGTGtgaagtgactttttttttttagatgtaaagTTGTGCCAAATTTTATTTCTCAGttatttcttaaattattaaatgcaAAATCCAAGTACAAATTTTATTCTACAAGTTCTAAGATCAGGTTCTATAGGTGACATAAGTATTTGAATCTGAATTTTGTATGTTTGAATTAACTATTTTCACTAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55941 True 1536 lncRNA 0.36 2 10490340 10491901
TU55943 False 295 lncRNA 0.32 2 10462890 10491901

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_1 NA coding upstream 170481 10292337 ~ 10292409 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 173274 10281508 ~ 10289616 (+)
lgsn NA coding upstream 427647 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 483306 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 492142 9968411 ~ 9970748 (+)
LOC103033216 LOC108428499 coding downstream 226839 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 241393 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 263308 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 264468 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 377721 10869622 ~ 10934882 (+)
LOC107197699 NA non-coding upstream 133782 10303738 ~ 10329108 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 230942 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 235927 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 332145 10128552 ~ 10130745 (+)
G41465 NA non-coding upstream 374806 10083990 ~ 10088084 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding downstream 43864 10535765 ~ 10585949 (+)
G41682 NA non-coding downstream 372812 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 375083 10866984 ~ 10867501 (+)
G41689 NA non-coding downstream 376231 10868132 ~ 10868418 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding downstream 493307 10985208 ~ 11016077 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 439926 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1527404 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1700098 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1938577 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2635976 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1079325 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1177546 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1261986 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1842443 12334344 ~ 12340913 (+)
G42068 NA other downstream 2140915 12632816 ~ 12633429 (+)

Expression


Co-expression Network