G41604 (LOC108270701,LOC108428498,LOC107737005,LOC107685214)


Basic Information

Item Value
gene id G41604
gene name LOC108270701,LOC108428498,LOC107737005,LOC107685214
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10535765 ~ 10585949 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55953
CTCAGTCACTCCTCGTAGAAAGGCATCTTTGGCCAACTTGGCAGGTCCATCCACAGTCTTCCCATCATCCTCCGGTCCCCAGCTGGCACTGTAAATGTCAATGTGCTGAGGGTTGAGGCTGAGAGACTGAGCCTCCACAGCATCGGTCACCTCTCCGTCCAGCATGCGCACTCCTCCAATCTTTGCGTTGTAGGCCACCCCCACCCCACAGATGTCATTGTTGGCAACAGCAGCAACTTCTCCAGCACATCGTGTCCCATGTCTGTTATCATTGAGCTGAGTGTATCTAGGCTGAGGGTCTGGGTCACCATCATTTACGTCATAGCTGGCATCTGGATCGTAATTCCGTTCAAGGTCAGGATGGTTCATCTCAATCCCATCATCCAATATGGACACCACCACACCCTTTCCAGTGACACCTTGCTTCCAGGCCTCCTTCACGTTGAGGTCACGATGGTTGCTGTTGTACAGGTACCACTGCTGTGCAAACTTTGGGTCGGCCGGCTCGGAGTAAATATCCCTCTTCTTCCTCCGTT

Function

NR:

description
PREDICTED: F-actin-capping protein subunit alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55953 True 536 lncRNA 0.53 5 10535765 10585949

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_1 NA coding upstream 243356 10292337 ~ 10292409 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 246149 10281508 ~ 10289616 (+)
lgsn NA coding upstream 500522 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 556181 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 565017 9968411 ~ 9970748 (+)
LOC103033216 LOC108428499 coding downstream 132791 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 147345 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 169260 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 170420 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 283673 10869622 ~ 10934882 (+)
G41597 NA non-coding upstream 43864 10462890 ~ 10491901 (+)
LOC107197699 NA non-coding upstream 206657 10303738 ~ 10329108 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 303817 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 308802 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 405020 10128552 ~ 10130745 (+)
G41682 NA non-coding downstream 278764 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 281035 10866984 ~ 10867501 (+)
G41689 NA non-coding downstream 282183 10868132 ~ 10868418 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding downstream 399259 10985208 ~ 11016077 (+)
G41731 NA non-coding downstream 448825 11034774 ~ 11035067 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 512801 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1600279 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1772973 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2011452 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2708851 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 985277 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1083498 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1167938 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1748395 12334344 ~ 12340913 (+)
G42068 NA other downstream 2046867 12632816 ~ 12633429 (+)

Expression


Co-expression Network