G41686 (tpm4a,LOC103036175,LOC107665514,LOC107561904)


Basic Information

Item Value
gene id G41686
gene name tpm4a,LOC103036175,LOC107665514,LOC107561904
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10985208 ~ 11016077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56055
ATTTGGATAATGACCCATTTCTTGTACCAGGAATCTGACTTACATCAGCAGCTTTCTTTTCAGAAAGTTCCAGTTTCTCCTGAGCGTCTTTCAGGGCCTCAGAGTACTTGTCCAGTTCATCTTCAGTCTGCTTCAGCTTCTTCTGCAGGGCCATCAGCTCATCATCCAGCTGTGCATCTGTCCTCCGCTGCTTTCTGCTCCGTCTCGGCCTGCTCCGCCCTGTCGATGGCGTTCTCCTTGTCCAGCTTCAGCATCtgcatcttcttcttgatgGCCTCCATGGTGATAATTTGTGTTTTCAACTAGGTCAAGGAACTTAGCAAGTGTGAAGCAGATGCTGCAGTCTGTTTTCTCCTTCTTCAGGAAAGCGAGAAAGAACAGGAGAGCTGcaactaaagagagagagagaaagagaaagagagagagagaagtggagGAGAATGCAGCTGATGCGAACCCAAAGCCGAAGCTGACCACACTGCTGGATCTGACTGTACAGAACCCGACCAGAGTAAGTAGCCAGCTCCCAGCTCCCTCCCTCTGC
>TU56058
GGAAAGTGAAGAAGAGACTTGTTTAAGAAAGGCACAGAGCAATGCAGAGCATTATTACAATTTGGTCCGTATTACATGTGGAGTATTGGATGGCATCATGCACTGACTTCCAGTCTCTCTAGAGCTTTGCACCCATAGAGGTGTTTGATTTACACATGATATGTTTGGCAGTTTTATTTGGCATATTAAAAGTTTACTACTTTTGGTCCCTCAGTCTTGTTTTTTGCTGTAGGTTTAAAAatggaattaataaaaaaaagcccccccaaattataataataaaaagtacaataaaattCTTCAAATGCAACCTtcattcaacaaaaaaaaaatccattgattgaCCAGCAGATGGCAGACTATCTGACCACACCGTTCACTCAGCGAGTGTGAAAAATAAACTGCATGCAGGAAATTTGGATGTTTCACATATAATGTAaacacatctttaaaaaaaaaagccttttggtaaaaataaagggCACTTGGTGAGCACCTCAGCAGCCAACCATCACCGATCATCAAACACTGGGGGAGTTACAGAAGAGGGTAAAGTGACAAATGAAATATTATggacaaattaaattaatccTCTGTGAGGAAACAGGTTTGAATAGCGGGAGATATGGAATTATGCTGGATGTTCATGGAATGTTGTAAGATGAAACTTCGCCCATCCCCCCTTCATATGCTGTTCAGCTCTTGGAGCGTCTGGTCCAGGACTTGGTGCATTCCGAGGTTTTCTTCTTTGGCGCTTGCTAATTTTTCTgcaaacagaaagacagacgcAGTTAGAAGCTGCAGTAGCTGGATTGGTTCAGGTTTGGGACAGGTTTAGTGAGTGCGCTTATTAAATGAACACAGTAACTCATGTAGTTCCGCTCTCTGTGTGGTTATTAGTCGTTTTTCCATTCAAAACAACCACACAGCTCCATTTGCATGCATTCATAGCTGCACTGCTAATCCATATGGAAATGTTCACTGCACAAGAAACGGGTGGtggggaaaacactgcagacaCAGCATGCAGAGAGAAGGCTGTGAACTAAAAGAGAGCTTAAGGAGGTGAGGGCAAACATGCTGGAAAATCAGATGTAAATGTGATCTCACCTTTGTTGACTTTCAAAAGGCAAACACTGCACTTGATCCAAATGTTAACTATTAGCTAAGCTAATCCAGTACAGTGTGATACacttaaagtgtgtgtgtgcagctaaCCAGTTATAATCTGACTGTAATTAAGAGTGTCATACACGTCTAAatccatataaatatatttatttataaaggcGTAGGAGATTATGCAAACATTTTAAAGCCATGTATGTAGACAATGTGCATCTCCACATGTAAAAACTCCatataaaagtagaaaaaaaaacaatcagtaatTGAGTTTACCTATAAAACTCTATGTGGCAGTTCCTCTAGTAAGGCATCAATGCCTTTAGTAGAGATTTTCcactaaaattagaatatagTCGAATATAGAATATAGACTAATCCCCATCCAAGAAAAGGAACCTATAACTTTAGAATCAACCCAAAATAACACAgaatctacctgtaattaaattTACATATGAAGACAAAGCATAAATCACCATACAGTCTGTTAATGTCAGAggaacagtactgtatatagtcTAAAATCGAAATGCTATATCAACCCATCCTTAGACACTTCTGAACAACCTGAAGAGAAATAATTAAGAGTAAGAGATGGAAATGGAAACAGAGAGCTTTTATTGAAACTAAGTTTTCCATTGCATAATAGGaaagcagagacagagagagccagcagagcagagagACAGCAGGGCATGAGAGGAGACAGGGCAGCAGCTACAGGGAGGTCATATCGTTGAGGGCATGGTCCAGCTCCTCCGAGATGGCCTTATATTTCAGCTTCTGAGCGTACAACTCATCTGTAGATCAGCAGGAAAAAGCAGGCAGAACAGGTGAGAACCAGAAGCAACAGGATGCagcaaagagagggagagaagacgAGATTAACAGAGACTAAAGAACATTAATATTCCTATTAAAACCAGAACAGTACAGGAACTTGGGTTATAGTCATGATTAGATTGGTATAACACCCCCTCGTAGGGCTGTGGAGCTGTGGATTCTACCACATTGgccttaaaggggcactaaaccacCTGATTTGTGCTTACTCCAAGACTAAAGGGGTATTTTGGGAGGGGcagtgggtgatgtatgggtttagagatggaataggagggagagctgattggctgagctgcagcagcagcagtgtgcctctgatagcagttagatgcagatggttggacatgAGCAGGGGagcagtattattgattgattattgaATGATCAACATATTATGATGAATCTGTGTAccaaagtaaacaaacacatcatatttgcctatagcacagctgaacctgtGAGGAAGCTGCAGAGGCGGATATTACagcaataaaagcgttttttaaaggttaggaaaaataaaagatttataCTAATTTCAAGCAGGACTGTTATGCTTTACAATGTCCaaggaacacattttagctattaatgaaaaaaaaaggtggtttagagtttagtggctAGTTGCTCATGTTTCCCCCCACCGCTATGTGTTGTGGGTGTGTACGAGGCTCCTTCATTGCCTTGTCTGAGCATGTACTGACATGGccagttagcatgctggctaataTTTAAAACTAGGTAAATTAGCCAGcataaaaatgatgttttaggtaatatttatgcagaaatacaaaaaatcaTAAGGGATTCtgaaactttcaagcaccactggaTGTGCAAagattatgttatattatattaaacagcGACATTAGAAACAGCTGTAATAAGTCATTTTTATGTTGAGAACCACACTGTTGAGAATACAACTTGCTGTAGGAACCAAAAGTTCAGAGAGCTGAAGTTGGAGACCACCCGCGTTTAGGATAGAAATATCAGTGCAATTTGGCGTTTTAACTCTATGTTGCTTGCTGCTCACCCGTGACTATAATTCATGTACTCCCATAAGAAATGACAGGATTAGCATGTCAACTGCTAGTGTGAAAACAGGGTAACACTATGTTGcttcaacaaaaatatataactctTTTtggattaaatatttttgttatttcctagattaaaaaaaaaaaaactaacaaaggtgtcccaatacttttgtccatacaatGTATGAGTTGTAATAGGTGCTGCCATCCTCTTAAAGAACATTAAGCAAATCACTTGGAAGCTTATAAAATTTCCATGTAACCAACAGCAAATATGCTCTCATGCTCTCTAAGCATATATACTTTTACACAGGCAATGCAAAGTAAAGGTACAGGAAGCTTCTACTGACAGCAGACATTCCACATTACTCCTGAGGATGGAGTAAAGCATAGCCCGTCACAGCAGATTCCATACACTCAGCAAAATATATCTGGAGAATATATCGCTTTCATGAGAAATGGTCCCAGCTGGATGTAATCCAAACCTCTATATTCCCAAACTAGCTTAAATCaacatatattgtatttatattccTTCGGTTTGGTGTAGAGGCGTAGCTGGACTGACCAGCTCTTGACCCGTGAAACCGTATCCATGCCGGATATTTGAAAATAATTCTTAACAGGAACATAACTTTTTTCAAGCATGCATGAAACAgacatcagccataacattaaaaccaccaacTAATATTGTGCAAGTCCCCCTTGTTCAGAGATATAAACATACTTtttcttacttaagtagaaattttggttatctatgctttactggagtaatttttTATAAGACCCTGTGGAGCAGCCTacgcttttgtccttaatggcatttttccccccttccattacttttacttttgatacttcaacttctacacaagtatttttaacccaagtatctaatacTAATACCTAAGTGATAAATGGGAATACTTTTACCTCTTTTGCCCTCGTTTCATCAAATACATCAACAAGTATGTTActccaaaaaacatttaaagttttCTGCTCTCAACACCATGATCTCAAGATCTTATATTATAAGTCCTGCTGACTTTAAGTTGCCAGGTTGGACCTCAATCCTCCGTTATGAGCTTTGGACTAAGGTTGCTATGGTC
>TU56060
GGAAAGTGAAGAAGAGACTTGTTTAAGAAAGGCACAGAGCAATGCAGAGCATTATTACAATTTGGTCCGTATTACATGTGGAGTATTGGATGGCATCATGCACTGACTTCCAGTCTCTCTAGAGCTTTGCACCCATAGAGGTGTTTGATTTACACATGATATGTTTGGCAGTTTTATTTGGCATATTAAAAGTTTACTACTTTTGGTCCCTCAGTCTTGTTTTTTGCTGTAGGTTTAAAAatggaattaataaaaaaaagcccccccaaattataataataaaaagtacaataaaattCTTCAAATGCAACCTtcattcaacaaaaaaaaaatccattgattgaCCAGCAGATGGCAGACTATCTGACCACACCGTTCACTCAGCGAGTGTGAAAAATAAACTGCATGCAGGAAATTTGGATGTTTCACATATAATGTAaacacatctttaaaaaaaaaagccttttggtaaaaataaagggCACTTGGTGAGCACCTCAGCAGCCAACCATCACCGATCATCAAACACTGGGGGAGTTACAGAAGAGGGTAAAGTGACAAATGAAATATTATggacaaattaaattaatccTCTGTGAGGAAACAGGTTTGAATAGCGGGAGATATGGAATTATGCTGGATGTTCATGGAATGTTGTAAGATGAAACTTCGCCCATCCCCCCTTCATATGCTGTTCAGCTCTTGGAGCGTCTGGTCCAGGACTTGGTGCATTCCGAGGTTTTCTTCTTTGGCGCTTGCTAATTTTTCCTTCCAAGTCATCGATGGATTTTTCCAGTTTGGCCACTGTTCTCTCTGCAAACTCAGCGCGGGTCTCAGCCTATCAGACACAATAAAGAGGGAAGGTTGAAAAGGTTCAGTAGGTTCTAGTGCTCATATCATCTTCCTTATTTATatgaacaaaaaacacataCCTCCTTCAGTTTATCACTAAGGACCTTGATCTCCTCTTCAtatttgtcttctttttctgAGTAtttctctgcCTGAGCTTCTAAGGATTTGAGGTTGTTGGTTACGTTTTTCAGCTCCTCCTCCAGATCACTGGCCTTGCATTCGGACACCTCGGCTCTCTCCTCTGCTCGTTCCAGTTCACCCTCGAGAATCACAAGCTTACGGGCCAcCTCCTCATATTTTCGGTCAGCCTCCTCTGCGATGTGCTTGGCCTCCTTTAGCTGCATCTCCTGGATCTCCATTTTCTCCTCATCCTTCATGGCACGGTTCTCGATCACCTTCATTCCTCTCTCGCTCTCGTCTGCTGCTTTCTCTGCCTCCTCCAGTTTCTGCAGGGCAGTGGTCAGCCTCTCCTGGGCTCGGTCaagctcctcctccaccagctgGATCCTGCGGTTTAGCGCTGCCACATCACCTTCAGCATCAGCAGCTTTCTTTTCAGAAAGTTCCAGTTTCTCCTGAGCGTCTTTCAGGGCCTCAGAGTACTTGTCCAGTTCATCTTCAGTCTGCTTCAGCTTCTTCTGCAGGGCCATCAGCTCATCATCCAGCTGTTTGCATCTGTCCTCCGCTGCTTTCTGCTCCGTCTCGGCCTGCTCCGCCCTGTCGATGGCGTTCTCCTTGTCCAGCTTCAGCATCtgcatcttcttcttgatgGCCTCCATGGTGATAATTTGTGTTTTCAACTAGGTCAAGGAACTTAGCAAGTGTGAAGCAGATGCTGCAGTCTGTTTTCTCCTTCTTCAGGAAAGCGAGAAAGAACAGGAGAGCTGcaactaaagagagagagagaaagagaaagagagagagagaagtggagGAGAATGCAGCTGATGCGAACCCAAAGCCGAAGCTGACCACACTGCTGGATCTGACTGTACAGAACCCGACCAGAGTAAGTAGCCAGCTCCCAGCTCCCTCCCTCTGC

Function

symbol description
tpm4a Predicted to enable actin filament binding activity. Acts upstream of or within cardiac muscle contraction and cardiac myofibril assembly. Predicted to be active in actin filament. Is expressed in several structures, including cardiovascular system; head mesenchyme; mesoderm; muscle; and thymus. Orthologous to human TPM4 (tropomyosin 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56055 False 544 lncRNA 0.50 2 11012246 11016077
TU56058 True 4147 lncRNA 0.38 2 10985208 10989394
TU56060 False 1897 lncRNA 0.45 8 10985208 11016077

Neighbor

gene id symbol gene type direction distance location
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 50326 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 124107 10756369 ~ 10861101 (+)
trnam-cau_21 NA coding upstream 229927 10755209 ~ 10755281 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding upstream 241862 10733294 ~ 10743346 (+)
LOC103033216 LOC108428499 coding upstream 254819 10718740 ~ 10730389 (+)
atp5d atp5d coding downstream 134558 11150635 ~ 11157835 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding downstream 160648 11176725 ~ 11201128 (+)
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding downstream 350188 11366265 ~ 11373344 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 746545 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 798420 11814497 ~ 12077978 (+)
G41689 NA non-coding upstream 116790 10868132 ~ 10868418 (+)
G41684 NA non-coding upstream 117707 10866984 ~ 10867501 (+)
G41682 NA non-coding upstream 120248 10864713 ~ 10864960 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding upstream 399259 10535765 ~ 10585949 (+)
G41597 NA non-coding upstream 493307 10462890 ~ 10491901 (+)
G41731 NA non-coding downstream 18697 11034774 ~ 11035067 (+)
G41732 NA non-coding downstream 26583 11042660 ~ 11043014 (+)
G41802 NA non-coding downstream 267160 11283237 ~ 11341114 (+)
G41839 NA non-coding downstream 701058 11717135 ~ 11718476 (+)
G41841 NA non-coding downstream 704044 11720121 ~ 11720995 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 962244 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2049722 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2222416 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2460895 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 3158294 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 555149 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 653370 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 737810 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1318267 12334344 ~ 12340913 (+)
G42068 NA other downstream 1616739 12632816 ~ 12633429 (+)

Expression


Co-expression Network