G41731


Basic Information

Item Value
gene id G41731
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11034774 ~ 11035067 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56120
GGACTGgagaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctatgaagctctccaTCCAAGTGGTTTGTCCTTTTAACTATTTGTAAAAATCTATTATC

Function

NR:

description
PREDICTED: protein FAM13A isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56120 True 294 lncRNA 0.37 1 11034774 11035067

Neighbor

gene id symbol gene type direction distance location
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 99892 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 173673 10756369 ~ 10861101 (+)
trnam-cau_21 NA coding upstream 279493 10755209 ~ 10755281 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding upstream 291428 10733294 ~ 10743346 (+)
LOC103033216 LOC108428499 coding upstream 304385 10718740 ~ 10730389 (+)
atp5d atp5d coding downstream 115568 11150635 ~ 11157835 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding downstream 141658 11176725 ~ 11201128 (+)
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding downstream 331198 11366265 ~ 11373344 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 727555 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 779430 11814497 ~ 12077978 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding upstream 18697 10985208 ~ 11016077 (+)
G41689 NA non-coding upstream 166356 10868132 ~ 10868418 (+)
G41684 NA non-coding upstream 167273 10866984 ~ 10867501 (+)
G41682 NA non-coding upstream 169814 10864713 ~ 10864960 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding upstream 448825 10535765 ~ 10585949 (+)
G41732 NA non-coding downstream 7593 11042660 ~ 11043014 (+)
G41802 NA non-coding downstream 248170 11283237 ~ 11341114 (+)
G41839 NA non-coding downstream 682068 11717135 ~ 11718476 (+)
G41841 NA non-coding downstream 685054 11720121 ~ 11720995 (+)
G41842 NA non-coding downstream 686265 11721332 ~ 11721804 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1011810 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2099288 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2271982 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2510461 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 3207860 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 536159 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 634380 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 718820 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1299277 12334344 ~ 12340913 (+)
G42068 NA other downstream 1597749 12632816 ~ 12633429 (+)

Expression


Co-expression Network