tmem161a (tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614)


Basic Information

Item Value
gene id tmem161a
gene name tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11669447 ~ 11709683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56250
AGGTTACCCGTGTATATTGTTACCTGACTGTAGTGACTCTGCAGTACCTCGTACCCGTTCTGCTCATGCTTTTCTCAACTCTGGCCCTCAAGTCTTTAGGTGACTACTCATGGGGTTTGGGTGCTGAGACTCCAGGTGTGACCCCTGCACCTATCCTCCCGACCGCGGCGCCAGCATTACCGAGAACAGAGGATGAAGATGATCTGGAGGACATGGAGGAGGACATCCAGGCCACTGTCGCCCACCTGTCCGAGGCTTTCACTGCCCTGCGTGCCGTCCTCACGCCCATCTTCTTCAGAGGGCTCTTCGCCTTCCTCACCTGGTGGGTGGCCGCCTGCCAGCTCATCAGCAGCCTGTTCGGCATCTACTTCCATCAGTACCTCATGCAGAGCTGAAGAGGCTTCAGGCTTTTCTAGGCTTGGAGCACAATGCCTAGCTTGTCGAGCTGCTGACCACCACCTGCACACACGGCTGTGCTATGAGCTCCAACATGCTAATGCAGAACACACTGAGCTCTCTAATGCCCCGAGAGACTGATAGTTTGGTCTTAAGTGAAGAACTGGAGACGATGATGTCTTTGGTTTGAAATAAAGGGATTTATTGGTACGGTATGGATACTGTGCTCATCACTGGTTCATCATCTTGATTTGTagcttccttttcttttttttattggaacaaATGAATTGTCTACTGAGTTTGCTGAGGCATGTTTTATCATGGTCAAACTTTTATTTAAGTTGTTTTATATTGcactcattttaaaaaaagtagttGCGTCCAGAATGATTaaagtgtcagattgcaatgTTATTCGGAAGGAAGATAgaggaacaataaataattaatgaaaCTTAAACTGATATAGGCAACATTTTATTGAGATACACAAACACCATGCATGTGTGTCTCAGGATGGCAAATGGATCAGTGTAGAGTTGTGCAGGTTTCTAATAGGTATGCAAAATGATATTGAAAATATATCAGTATCGGACaatactccccctatcactttcgatgccccaaaaccaggagggtgaagactagcgcatgcctcctccaatacatgaaGTCATCCACCGCCGCTTTTcgaagcgcagcgactcggttctgatacatcagctcacagacgcagccttctgctgatcgacatcaccctttggagtaatgaggggaaagagcaccatcgaCCCACCCAGAAatagcaaggccaattgtgctttctcagggctccggcagctgaaggcaagctgcatgaacaggattcgaatcagcaatctcccgatcaccATCAACAGTTAAAAAGTTATACCCTGATGGCCCATATGGCCCTTAATATTATagcaatatttcagggtatttattGATAATGATATTCAACAATTTTgccaatattattgcatatgatacgatatgaCACAACCCTTACATTTAGAAAAGGTAGAATCACTGGTTGCAGGCCATCATTAATGAAAAGTTGAGCTCTCAAAGTGCATGTAATGAAGACTTAAGGTGATCTGACATTGTACAAAATTGCCCTCCACTCCACGATAGCAGGCCATTGGATGTTTGACTTGTGAAAAGAAAGcgtacacactacttctgtatgtttaGCTTAGTAATTTATTaaccatatcagtctaaatgtttaaacattttattgttcctggtaacctctAGATTCCCTCCAAACAGCATTGCAATGCAACAATTCCTTCTCGTTGcaattatttcttttgttttgacGAAGTGTATATCTTTGTGATAATcatagtttttctttttccccccacaaaacaaatgaattaatttagaaTAACATACAGCTTCATTCATGAGTTTGGTGGTGATGTCTTTGATTGGATGTGATGTAATACTAAGTGCCTGGTAACTCAGGGAAGTGAAATCAGATACGGTATCTACTCTACCAGCATGCAATAACGGATAAACTGCTTTATTTCGATGCTGTTGGCAAACACAGTTAAATGCAGTCATTCTGAATCACTCCCTGTTTTTGTAACGTAAAAGATTATGATGTATTAAAGCTTCTGGTTTCCTTCATGCAGTATTTCTCCCTGCGGGATGTGCAGGTTTTGCTGCAGAGCTGCATTCACTGTAccttactgtatttaaaatatcaaGCAAATGCAATCAAAGAGGCAGCAGTAGAAGTACCTCAGATCTGATCCTgaacatttctcatttatttattaatatttatcatGTCATCATGTCATACACACTCATTTTAGAAGAGGTGATCTGTTAAACGgtacagaaatatttttttcttttttttttgtttttgcactgattttaaaataactgaTCAATGGAACGCATGGTGTGACAAAACTGGGTGTTGCTGGgattgtgttttattaaaatccaaaaatgtttaaagttcCTTTGTATTTgcattgctttattttattaataatttgtaCAAATGATGCAGAGAAGTACAGAGTAAAACACCTTTCCTATATTTactgttacatttattttgttgtggaCATTAACCACAGTTCATGTTTTGTTTGGTCAACTTAAGTTTAGTTATTAataaacag
>TU56253
TAGAAAGAAAGGTTACCCGTGTATATTGTTACCTGACTGTAGTGACTCTGCAGTACCTCGTACCCGTTCTGCTCATGCTTTTCTCAACTCTGGCCCTCAAGTCTTTAGGTGACTACTCATGGGGTTTGGGTGCTGAGACTCCAGGTGTGACCCCTGCACCTATCCTCCCGACCGCGGCGCCAGCATTACCGAGAACAGAGGATGAAGATGATCTGGAGGACATGGAGGAGGACATCCAGGCCACTGTCGCCCACCTGTCCGAGGCTTTCACTGCCCTGCGTGCCGTCCTCACGCCCATCTTCTTCAGAGGGCTCTTCGCCTTCCTCACCTGGTGGGTGGCCGCCTGCCAGCTCATCAGCAGCCTGTTCGGCATCTACTTCCATCAGTACCTCATGCAGAGCTGAAGAGGCTTCAGGCTTTTCTAGGCTTGGAGCACAATGCCTAGCTTGTCGAGCTGCTGACCACCACCTGCACACACGGCTGTGCTATGAGCTCCAACATGCTAATGCAGAACACACTGAGCTCTCTAATGCCCCGAGAGACTGATAGTTTGGTCTTAAGTGAAGAACTGGAGACGATGATGTCTTTGGTTTGAAATAAAGGGATTTATTGGTACGGTATGGATACTGTGCTCATCACTGGTTCATCATCTTGATTTGTagcttccttttcttttttttattggaacaaATGAATTGTCTACTGAGTTTGCTGAGGCATGTTTTATCATGGTCAAACTTTTATTTAAGTTGTTTTATATTGcactcattttaaaaaaagtagttGCGTCCAGAATGATTaaagtgtcagattgcaatgTTATTCGGAAGGAAGATAgaggaacaataaataattaatgaaaCTTAAACTGATATAGGCAACATTTTATTGAGATACACAAACACCATGCATGTGTGTCTCAGGATGGCAAATGGATCAGTGTAGAGTTGTGCAGGTTTCTAATAGGTATGCAAAATGATATTGAAAATATATCAGTATCGGACaatactccccctatcactttcgatgccccaaaaccaggagggtgaagactagcgcatgcctcctccaatacatgaaGTCATCCACCGCCGCTTTTcgaagcgcagcgactcggttctgatacatcagctcacagacgcagccttctgctgatcgacatcaccctttggagtaatgaggggaaagagcaccatcgaCCCACCCAGAAatagcaaggccaattgtgctttctcagggctccggcagctgaaggcaagctgcatgaacaggattcgaatcagcaatctcccgatcaccATCAACAGTTAAAAAGTTATACCCTGATGGCCCATATGGCCCTTAATATTATagcaatatttcagggtatttattGATAATGATATTCAACAATTTTgccaatattattgcatatgatacgatatgaCACAACCCTTACATTTAGAAAAGGTAGAATCACTGGTTGCAGGCCATCATTAATGAAAAGTTGAGCTCTCAAAGTGCATGTAATGAAGACTTAAGGTGATCTGACATTGTACAAAATTGCCCTCCACTCCACGATAGCAGGCCATTGGATGTTTGACTTGTGAAAAGAAAGcgtacacactacttctgtatgtttaGCTTAGTAATTTATTaaccatatcagtctaaatgtttaaacattttattgttcctggtaacctctAGATTCCCTCCAAACAGCATTGCAATGCAACAATTCCTTCTCGTTGcaattatttcttttgttttgacGAAGTGTATATCTTTGTGATAATcatagtttttctttttccccccacaaaacaaatgaattaatttagaaTAACATACAGCTTCATTCATGAGTTTGGTGGTGATGTCTTTGATTGGATGTGATGTAATACTAAGTGCCTGGTAACTCAGGGAAGTGAAATCAGATACGGTATCTACTCTACCAGCATGCAATAACGGATAAACTGCTTTATTTCGATGCTGTTGGCAAACACAGTTAAATGCAGTCATTCTGAATCACTCCCTGTTTTTGTAACGTAAAAGATTATGATGTATTAAAGCTTCTGGTTTCCTTCATGCAGTATTTCTCCCTGCGGGATGTGCAGGTTTTGCTGCAGAGCTGCATTCACTGTAccttactgtatttaaaatatcaaGCAAATGCAATCAAAGAGGCAGCAGTAGAAGTACCTCAGATCTGATCCTgaacatttctcatttatttattaatatttatcatGTCATCATGTCATACACACTCATTTTAGAAGAGGTGATCTGTTAAACGgtacagaaatatttttttcttttttttttgtttttgcactgattttaaaataactgaTCAATGGAACGCATGGTGTGACAAAACTGGGTGTTGCTGGgattgtgttttattaaaatccaaaaatgtttaaagttcCTTTGTATTTgcattgctttattttattaataatttgtaCAAATGATGCAGAGAAGTACAGAGTAAAACACCTTTCCTATATTTactgttacatttattttgttgtggaCATTAACCACAGTTCATGTTTTGTTTGGTCAACTTAAGTTTAGTTATTAataaacag
>XM_015606706.2
TCCACAGGAGGAGAGCAGGTCGCAGATGTCAATCAAACACTCATTCAGCTGTTCCAGGAGCGGTGAGCTGCACTGAACCTCGCTGAGTACTGCGTCTAATCCAGCATGGCGCTGATGGGAGTTCAGTTGGTGGTCAGCTTGCTGGCCGTCAGTATAATGCAGAAAATGGCCCCACATTACTCCTTTGCACGCTGGCTCTTATGCAACGGCAGTCTCCTGAGGTTCAAACATCCTTCTGAGGGAGAGCTCTGCGCTCTGGCTGGCAAGCAGGTGCCCAACAAGTCCAGCAGGCGAGACAGGAGGCAGAATGGCCACGGGGAGCAAAAACCACTCACGGTGCCGAAGGACATAGATTTACATCTGGAAAGCACTCCTGTAAATGTTTTAGATGCTCTGGTTCTGCGCTTCTTCGTTGAATATCAGTGGTTGATTGACTTCGCTGTGTACGCCATGGGCATTTACCTCTTCACTGAGGGCTACTACTTTGTAGTGGATGCCAGTAAAGAGGTCAACATCGGGGCCATCTGGTGTGTCCTGATGGTGTTCTTTGGACTGAGAACTCTCCATGTCCTGATGAGCCACTATTTCCGCTCGGACGAGGGCGGTGAACGTTCTGTCTGCCTGGCTTTTGGGTTCATGTCTCTTCTCATAGCCATGCTGGTTTTGGTTGTGAAGGAGGACTATCTAGAGTTCGGGCTGGAGCCTGGTTTCACCAGTGTCTTCGACAACTTTGAAGTGTTTGCCAAACAGCAGGGTCTTGAGTGGTCAGTACCTTTCACCAAACTTGGAGTAAAGTTGGCCCTGGCTGCTGTTTGTGCCTTTCTTGGAGCTCTTCTTGCCTTTCCTGGACTCCGCCTTGCCCAGACGCACTTGGATGCTGTGCAGATGAACAGTGACCGGCCAATCATTCAaatccTCCTACACACCAGTTTCCTCTCTCCACTGGTCATTCTTGTGATGTGGGTAAAGCCTCTGGCCCGTGACTTCTTGGGGAATGCTCCTATGGGAAAGACGTCAGTCACTTTGATTTCCAGCTCAGTCTTTGACTCTGTGCGGCTGTGGACGATTGTGGTGTTGTGCGTGTTAAAGCTGCTGCTCACCCGTCACCACCTGCAGGCCTACCTCAACCTTGCCCCCAAGTGGGTGGAGCAGATGAAAAAGGAGGCGGGGCGTATAGCTGCAATTGACATCCAAAGAAAGGTTACCCGTGTATATTGTTACCTGACTGTAGTGACTCTGCAGTACCTCGTACCCGTTCTGCTCATGCTTTTCTCAACTCTGGCCCTCAAGTCTTTAGGTGACTACTCATGGGGTTTGGGTGCTGAGACTCCAGGTGTGACCCCTGCACCTATCCTCCCGACCGCGGCGCCAGCATTACCGAGAACAGAGGATGAAGATGATCTGGAGGACATGGAGGAGGACATCCAGGCCACTGTCGCCCACCTGTCCGAGGCTTTCACTGCCCTGCGTGCCGTCCTCACGCCCATCTTCTTCAGAGGGCTCTTCGCCTTCCTCACCTGGTGGGTGGCCGCCTGCCAGCTCATCAGCAGCCTGTTCGGCATCTACTTCCATCAGTACCTCATGCAGAGCTGAAGAGGCTTCAGGCTTTTCTAGGCTTGGAGCACAATGCCTAGCTTGTCGAGCTGCTGACCACCACCTGCACACACGGCTGTGCTATGAGCTCCAACATGCTAATGCAGAACACACTGAGCTCTCTAATGCCCCGAGAGACTGATAGTTTGGTCTTAAGTGAAGAACTGGAGACGATGATGTCTTTGGTTTGAAATAAAGGGATTTATTGGTACGGTATGGATACTGTGCTCATCACTGGTTCATCATCTTGATTTGTagcttccttttcttttttttattggaacaaATGAATTGTCTACTGAGTTTGCTGAGGCATGTTTTATCATGGTCAAACTTTTATTTAAGTTGTTTTATATTGcactcattttaaaaaaagtagttGCGTCCAGAATGATTaaagtgtcagattgcaatgTTATTCGGAAGGAAGATAgaggaacaataaataattaatgaaaCTTAAA

Function

symbol description
tmem161a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; polster; and somite. Orthologous to human TMEM161A (transmembrane protein 161A).

NR:

description
PREDICTED: transmembrane protein 161A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56250 False 2573 lncRNA 0.41 2 11704191 11709683
TU56253 True 2582 lncRNA 0.40 3 11669447 11709683
XM_015606706.2 False 2057 mRNA 0.50 12 11697488 11707969

Neighbor

gene id symbol gene type direction distance location
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding upstream 296103 11366265 ~ 11373344 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding upstream 468319 11176725 ~ 11201128 (+)
atp5d atp5d coding upstream 511612 11150635 ~ 11157835 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 734565 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 808346 10756369 ~ 10861101 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 52939 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 104814 11814497 ~ 12077978 (+)
trnaa-agc_12 NA coding downstream 403449 12113132 ~ 12113204 (+)
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding downstream 435529 12145212 ~ 12240406 (+)
LOC103046586 LOC108429538 coding downstream 538954 12248637 ~ 12285219 (+)
G41802 NA non-coding upstream 328333 11283237 ~ 11341114 (+)
G41732 NA non-coding upstream 626433 11042660 ~ 11043014 (+)
G41731 NA non-coding upstream 634380 11034774 ~ 11035067 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding upstream 653370 10985208 ~ 11016077 (+)
G41689 NA non-coding upstream 801029 10868132 ~ 10868418 (+)
G41839 NA non-coding downstream 7452 11717135 ~ 11718476 (+)
G41841 NA non-coding downstream 10438 11720121 ~ 11720995 (+)
G41842 NA non-coding downstream 11649 11721332 ~ 11721804 (+)
G41906 NA non-coding downstream 408749 12118432 ~ 12121430 (+)
G41954 NA non-coding downstream 575870 12285553 ~ 12285980 (+)
G41828 LOC108429549,LOC108271147 other upstream 89118 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1646483 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2733961 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2906655 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 3145134 8512104 ~ 8524313 (+)
tmem221 tmem221 other downstream 44204 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 624661 12334344 ~ 12340913 (+)
G42068 NA other downstream 923133 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 995876 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1738909 13448592 ~ 13450477 (+)

Expression


Co-expression Network