tmem221 (tmem221)


Basic Information

Item Value
gene id tmem221
gene name tmem221
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11753887 ~ 11758708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56269
TTTGAGTGAGGAGAGCCACGGTTTCCGCACGGCCATGTCCTACAGCCAGCGGGCTCTGGTGGTCCTGGCGCTGCTGGGAGTTCTGTCCGCGGTCATGTCCGTCCTGTCCGTGTTCCTCATCTTCCAGCTGCAGGCTCGCCAAGGCAAGGAGGCTCCGTCCGTCGTTCCGAGCGACGTTTCCGCCGTTTTAATGCCGGTCTCCGTCGTCCTTTCAGCGCTTTCTCTCACCCTCAACTCCAGCTCCGTGGTTGTGTGTCTGCTGCACAGCTACTTCTCAACCGAGGTCTGCCGAGGAGGAGAAGACACGCAGAGGGCTGACTGGTTTCTGTTGGAAAGCAGGGCCGTCCGGCATGTAGCCATTGGCTTGTTCTGCTTAGGGATATCCGTTTATCTAAGCGGTAAGTGACGTCAACATCAACAGTTTCAGTGTCACTTTAATGATCATTCAAATCGTTACACACATACAATCTCATTCGttttaaatcagtaaaaaacaaaaacattattacaGAATAAACATTAGTTCCAAAGTATGCATTCACAATGCAGTGCTAGTATTACATTACAGTATTTCAGTACTATGTGAAAGTATTTATACGCAGCAGAGAACAATCCCTTCCTTCACACCCTTGatgaaatactgtaagtaagGACCTGGCAAAGCCCTCGCATTCATTCCAGCCCAGTGCCAAGAGCCAGAGGACTGAAACTCAAGAGGAACCACAGACTCAAACTCAAAGTGGAGTGAGGTTCACCCCTGGCCCAAAGTCCATTCAGTGGGGCTGCAGGTGCACTTCATATCCCAGAACTCTGCTTCTCACCGCCATCCCTCAGTATACCAGGATCCACAGCTCTTTtcctgtagaaaaaaaagtcaaatagaAGAAATCCTTCTTTTCACAAGAAGCCTCCTCAGATAATCCTGTTCAGTAAAAATATACGTGTACCACAGTCTTTATTTTAGGCTTAAAGCTGTCCAAGAATGATAAACAGTATTAAGACTGGCATAGTTGAGTAATGAGAGTGCAGTTCATGGGAGCGACAAACCGTTACCTTCAAACACAGCTGTTCCTACTATAAAAGAGCATCCAGCAGTAGCAAAAGAGCTATATAAATGTATTGCATCATTCTATTTAAAACCCCCAATATAAACTctgcacaataaaaaaaacgtttttt
>XM_007252638.3
ccaccttaaatgctgccgcCGCTGCATTGTAGTGCCTTTCTCGGCGATTTGATTGATACAGTGCATTTAAGGTGGTATGGAAAGTTCCACAATAAAGTTGTAAAAGTTCAGATTTATTAAAAGTTCGTGCCAAATGCTGTTTACTGGTGGGTGTTGGTGCTGTTTAGAGTCGTGTGAGCTTCGTGTCGGAAGGAAAGTTCattgttttgctttgtttttaatCTGGGGATTGTAATTGAGGCTGAATCACATGTTCAGGCTGAGCTGCAGCCGAGAGCTGGACTGAGGGCTGTGGGGGCAACTAATGCAGCAACCTGGGGCAAAACAGAGTTAGTCCTGCAGTCTGGAGCTGCTCTGAGGGCGGTGTATCGGGCTGTATGAGTTCTACACGGTCTACAGGCTGTTCTCTGTGTGAGAGAGGAGTCTGCAGCAGTGAAGGAGATAAATATTGAGGAGTTTGAGTGAGGAGAGCCACGGTTTCCGCACGGCCATGTCCTACAGCCAGCGGGCTCTGGTGGTCCTGGCGCTGCTGGGAGTTCTGTCCGCGGTCATGTCCGTCCTGTCCGTGTTCCTCATCTTCCAGCTGCAGGCTCGCCAAGGCAAGGAGGCTCCGTCCGTCGTTCCGAGCGACGTTTCCGCCGTTTTAATGCCGGTCTCCGTCGTCCTTTCAGCGCTTTCTCTCACCCTCAACTCCAGCTCCGTGGTTGTGTGTCTGCTGCACAGCTACTTCTCAACCGAGGTCTGCCGAGGAGGAGAAGACACGCAGAGGGCTGACTGGTTTCTGTTGGAAAGCAGGGCCGTCCGGCATGTAGCCATTGGCTTGTTCTGCTTAGGGATATCCGTTTATCTAAGCGCTATGGCCATTTACATGCTGCTGGTTTTCGAGATCGAGACAGGAATAGCCAGCGTGTGTGTGCTCTCCTCTGGTGTGCTTGTACTGCTGGTCATAGTGGCTCACTCGCTCTTCAGAGCGGCACGCACAGCCAAACGCTTCCGGCACCAGCAAGTCAGCACCGTGTACCAGAACAACCCCGAGATCAGCCCTGCCGTTCACCCCTCAGAGCTCAGCTTCAGAGAGAAGCCTAGGAGGCAGCTCAGTCAAGCCGACCTGCACCACCAGTACACCTACCCACCCTCCACTGATCCCAAACAACAGTACTCGCCATCCAGGGGCCAGCACAGTCACTCCAGCGAGAGAGAAGCCTACAACACcagcggcggcagcagcagcagccggaTGCACAGGACCCTGTCTGCGGAGTCTGGCCTGCTTCAGGCTCAGGCCAAGCCTTGGAACGGCGTTAACAACGAGATGAGGACTGTGCTGGCTCGCAAAGCCACCAGTAAAGACTCCACACTAGTGTGAAGAGCTATTACTGTATGTGTAATGTCTTCAACTGCTGATTATTTTACTACACAGTAGTTCTAGTAATAACATATACACCAGGCTGTTAAATATAGGTATACATTATAGATATATCTTATTAACTGTACTTTACTCTATACATTCCATGTAGTACTAAGATCTGTAGTACTGCAGTATCCCAGGTTGACCACTTACACATTAATaacactaaattaataaaaaataaactcacaataaaaatatctggaaCTGGAAGACACTGCTGTAATTTGTGTTCAACACTAAGGAGTATTCAATCAGATttcaaaacataaaaccataaaGAAAACTACATAAAAGCTTTCACATACAATAATAATGTAtctattataattaaaataaaggactTTTAACTCACAATGACATTGgtaataaaatgttaagaatgtc

Function

symbol description
tmem221 Predicted to be integral component of membrane.

NR:

description
transmembrane protein 221-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56269 False 1179 TUCP 0.46 2 11754343 11757209
XM_007252638.3 True 1795 mRNA 0.48 3 11753887 11758708

Neighbor

gene id symbol gene type direction distance location
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding upstream 380543 11366265 ~ 11373344 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding upstream 552759 11176725 ~ 11201128 (+)
atp5d atp5d coding upstream 596052 11150635 ~ 11157835 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 819005 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 892786 10756369 ~ 10861101 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 3914 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 55789 11814497 ~ 12077978 (+)
trnaa-agc_12 NA coding downstream 354424 12113132 ~ 12113204 (+)
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding downstream 386504 12145212 ~ 12240406 (+)
LOC103046586 LOC108429538 coding downstream 489929 12248637 ~ 12285219 (+)
G41842 NA non-coding upstream 32083 11721332 ~ 11721804 (+)
G41841 NA non-coding upstream 32892 11720121 ~ 11720995 (+)
G41839 NA non-coding upstream 35411 11717135 ~ 11718476 (+)
G41802 NA non-coding upstream 412773 11283237 ~ 11341114 (+)
G41732 NA non-coding upstream 710873 11042660 ~ 11043014 (+)
G41906 NA non-coding downstream 359724 12118432 ~ 12121430 (+)
G41954 NA non-coding downstream 526845 12285553 ~ 12285980 (+)
G41961 NA non-coding downstream 569187 12327895 ~ 12328238 (+)
LOC107197698 NA non-coding downstream 673319 12432027 ~ 12437339 (+)
G41975 NA non-coding downstream 695787 12454495 ~ 12456795 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 44204 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 173558 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1730923 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2818401 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2991095 8718560 ~ 8762792 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 575636 12334344 ~ 12340913 (+)
G42068 NA other downstream 874108 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 946851 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1689884 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 1750312 13509020 ~ 13522257 (+)

Expression


Co-expression Network