G46106


Basic Information

Item Value
gene id G46106
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8408962 ~ 8835381 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52446
TCAGCTTTGCATTGAATAAATTGGCAGTGAGCAACTAAAAACAAAATGGCTAAAAATAAATATAATTGTGTAGCATTTTCAAAAAATAAATTCCAACATATTTATATAGTGAGTTTCACAATATAAATTACTCTGTATCAACATGGCAGTGAAACCACAAGTGACCAAAAACAGCTACAGTTGTTGTGGCAAGGAAAACTTAAAAAAAAAGAAAAAAAAAGAAAGAAAGAAAAGAAAAATGACTTAGATTTAGAGTGAGACTGAAGGGTTGTGGAGAAAAAAAAATCTTTTGACTGAGGTATCTTGAAAACTGATTAATTCAGAGCTGCCAGTGCATATCTGAGTCATGGTCTCTCTCATTATCTGTATTCATAAAACAGTGTTACGCAGCATATTTTAAGGCGAGACATGCTGTGCAGAATTATACAGTTTTGATTGAGTGCATATGAAATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52446 True 456 lncRNA 0.34 2 8408962 8835381

Neighbor

gene id symbol gene type direction distance location
CI01000006_08229755_08241410 SMPD4 coding downstream 167552 8228996 ~ 8241410 (-)
CI01000006_08225810_08227168 NA coding downstream 181794 8225691 ~ 8227168 (-)
CI01000006_08207762_08211601 CRKL coding downstream 196760 8206671 ~ 8212202 (-)
CI01000006_08194421_08196816 NA coding downstream 212077 8194131 ~ 8196885 (-)
CI01000006_08153453_08156753 RPL17P7, RPL17P6, RL17, RPL17.L, RPL17.S, RPL17, RPL17-C18ORF32, RPL17-PS9 coding downstream 251356 8153442 ~ 8157606 (-)
CI01000006_08866054_08871468 NA coding upstream 30638 8866019 ~ 8871468 (-)
CI01000006_09019351_09023876 STOM coding upstream 183895 9019276 ~ 9023876 (-)
CI01000006_09161066_09181709 TSC1B, TSC1 coding upstream 325546 9160927 ~ 9181709 (-)
CI01000006_09197554_09198425 NA coding upstream 361894 9197275 ~ 9198425 (-)
CI01000006_09205576_09277358 BCR coding upstream 370195 9205576 ~ 9278154 (-)
G46018 NA non-coding downstream 132633 8198232 ~ 8276329 (-)
G45986 NA non-coding downstream 328706 8080018 ~ 8080256 (-)
G45985 NA non-coding downstream 329266 8079468 ~ 8079696 (-)
G45970 NA non-coding downstream 369013 8039680 ~ 8039949 (-)
G45960 NA non-coding downstream 478268 7930402 ~ 7930694 (-)
G46199 NA non-coding upstream 141290 8976671 ~ 8976871 (-)
G46102 NA non-coding upstream 163712 8999093 ~ 9008209 (-)
G46076 NA non-coding upstream 178750 9014131 ~ 9016971 (-)
G46208 NA non-coding upstream 188758 9024139 ~ 9026251 (-)
G46257 NA non-coding upstream 261078 9096459 ~ 9096705 (-)
CI01000006_07500281_07507754 NA other downstream 898006 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 1432090 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 3846894 4559509 ~ 4562068 (-)
G43549 NA other downstream 4053534 4352510 ~ 4355428 (-)
G43102 NA other downstream 5474978 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 1647475 10453613 ~ 10484006 (-)
G47658 NA other upstream 2195530 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 2814982 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 3499028 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 3515378 12569205 ~ 12582487 (-)

Expression


Co-expression Network