G41954


Basic Information

Item Value
gene id G41954
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12285553 ~ 12285980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56429
gccaatttacacagccaattacctaacccactcattaggactcctatcactagtgatgcaccaacaccaggaggatgaagactagcacacccCTAGTCAGCCACcgtctctttttaaactgctgatgcagcattaccgagtagcatcacagcacgctcagaggaaagtgcagtgactcggttctgatacatcagctcactgaCGCCTcatgctgcagacatcaccctttggaacgattaggggagagagcaccatctactcacccagaaaagagcaaggccaattgtgctctctcagggcccTCGGAGCCCCCTCATTTCAACCATTTAACCAGGATTTgattaattataaaatgtagCTTGATTCTTGTCTGACCCACAATTATGGATGCAGGGCAGTCTAAATAAACTCCTGAGTCTGGACTCATC

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56429 True 428 lncRNA 0.48 1 12285553 12285980

Neighbor

gene id symbol gene type direction distance location
LOC103046586 LOC108429538 coding upstream 334 12248637 ~ 12285219 (+)
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding upstream 45147 12145212 ~ 12240406 (+)
trnaa-agc_12 NA coding upstream 172349 12113132 ~ 12113204 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding upstream 207575 11814497 ~ 12077978 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding upstream 517856 11762622 ~ 11767697 (+)
LOC103046074 hmha1b,LOC108429536,LOC108271042,LOC107655244,LOC107669820 coding downstream 1937 12287917 ~ 12323072 (+)
LOC103021640 pip5k1c,LOC108429534 coding downstream 55634 12341614 ~ 12388429 (+)
LOC103047600 rab11b,LOC108429533,LOC107599444,LOC107655249,LOC107592688,LOC108280567 coding downstream 112293 12398273 ~ 12405148 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding downstream 121566 12407546 ~ 12419643 (+)
hnrnpm hnrnpm,hnrpm coding downstream 134607 12420587 ~ 12429846 (+)
G41906 NA non-coding upstream 164123 12118432 ~ 12121430 (+)
G41842 NA non-coding upstream 563749 11721332 ~ 11721804 (+)
G41841 NA non-coding upstream 564558 11720121 ~ 11720995 (+)
G41839 NA non-coding upstream 567077 11717135 ~ 11718476 (+)
G41802 NA non-coding upstream 944439 11283237 ~ 11341114 (+)
G41961 NA non-coding downstream 41915 12327895 ~ 12328238 (+)
LOC107197698 NA non-coding downstream 146047 12432027 ~ 12437339 (+)
G41975 NA non-coding downstream 168515 12454495 ~ 12456795 (+)
G42070 NA non-coding downstream 348482 12634462 ~ 12634735 (+)
G42091 NA non-coding downstream 401545 12687525 ~ 12692753 (+)
tmem221 tmem221 other upstream 526845 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 575870 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 705224 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 2262589 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 3350067 8921928 ~ 8935486 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 48364 12334344 ~ 12340913 (+)
G42068 NA other downstream 346836 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 419579 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1162612 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 1223040 13509020 ~ 13522257 (+)

Expression


Co-expression Network