G42096 (LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586)



Basic Information


Item Value
gene id G42096
gene name LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12705559 ~ 12715028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU56657
TGCTGGGTTCCAAGTTTCTGAAGCATCTTCAGGTATTGGAACACCAAGTGGACGATCTGGGAGACGTTCTGGTAACCCTCATCAGTCAGGGTGATGGAAATGCTGAAGATGGAGTAGGTGGTGTTCTGGTCAAAACCTGTCTCACTATTTCCTCCAAACAGAGCCAGAGCccaacacTTCTTTCTGAGCACGGAGAGAATACTGCCAGCACCCTCGTGGCCAATCAGCCAGGATATGTAGTGCAAAGGCTTGACTCTGTAATGTTTGTCCTGAGGAGGTAAAGCCCAGCTGATGGTGAGAGCGTGGATTTTTCTCACAGGAACCACTCTGTAAAGTTTGTTGAAATCTGGTGTATTAAACGGGTCCTGAAGGTTTGAAAAATCAGGCCGAGGCTGACCATTGTTGGGGACCTTGATGAAGATCTCCCTCACCCATTCCTCTAAAGTGTCCAGAGTCTCTCTGGATTGAACAGTGAGGGTCATGTAATGTGCAGAGTAGTATCTCTTCCAGAATTCCCGCAGACGCTCATAagtatttatcttattttcctTTGGTTCGTGCTTCAGAGTTTGGGCATTTCCCCAGCAGAACTTAGTCATTGGGTGGTTGGGCTTTGCAAGGCTTCCAAAAAGCATTTCTTTGCGATGGGAGTCTGACGGTCTGGCTAACTGGTATTCACTATCAACGGCTTCCACCTCCCTGTCAATAGCGTCCTCTATCATCAGAGGACAGATGAAGAACTGTGCCCACCTATCCAGAGCCTCTCTGAAGTACTTCCTCTGAACATCAAACTGAAAGATGGTCCTCTCGCAGTCTGTAGAAGCATTGTCACTGCCCCCGTGTTTCTTCAGAAATGCATCAAAACCATTTTCAGCTGGGTACTTCTCACTGCCCATGAACACCATGTGCTCAAGGAAGTGGGCCAGACCAGGCAGATCCTCAGGATCACTGAAGCTtcccacacagatacacagagcAGCTGCTGACTGTTTCTCTGAGCTTGCCTTCTTTTTCGTCCTTACTTCACAGCTCTCATCAGAGCCCTTACTATCCTCACCATGTTCACTGCTGTCATGTTCCTCTTCCTCAGAACTCCCACCCTCCTCTTCATCTTCCTCACTGTCATCCTTTTCAGCTTCTTCTGTTCCTGGCTGCTCAGAGTTATTTGTGCTGTGCTCTCGGCTCTGGTCTGAGATGAGCAGTGCTTTCAGTCCATTGTTGAGCTCAATGTACCTGTACTTCTTTGGGTCACTGGGTGATTTGATTATCTGCAGGTCCTCAAGCTCTTTTTCTGCTGCCTCTACATTGTCCCCAGAGGTCAGTGAAGCTCTTGGCTCTGGCGTTGGTGGTGGCTCCCCCACTGTCAGGCACAGCTGCTTGAACTGTTCCACTGGagaaattagatttatttttctgaGGCATGTCTGGAGGTTTGT

Function


NR:

description
PREDICTED: nardilysin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU56657 True 1436 TUCP 0.48 13 12705559 12715028
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Neighbor


gene id symbol gene type direction distance location
LOC103025446 nphs2 coding upstream 48445 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 275713 12420587 ~ 12429846 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding upstream 285916 12407546 ~ 12419643 (+)
LOC103047600 rab11b,LOC108429533,LOC107599444,LOC107655249,LOC107592688,LOC108280567 coding upstream 300411 12398273 ~ 12405148 (+)
LOC103021640 pip5k1c,LOC108429534 coding upstream 317130 12341614 ~ 12388429 (+)
nfia nfia,LOC107592693,LOC107599440 coding downstream 145106 12860134 ~ 13094617 (+)
patj patj,LOC107715056,LOC108245549 coding downstream 447034 13162062 ~ 13365321 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding downstream 738590 13453618 ~ 13465045 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 837884 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 847204 13562232 ~ 13590417 (+)
G42091 NA non-coding upstream 12806 12687525 ~ 12692753 (+)
G42070 NA non-coding upstream 70824 12634462 ~ 12634735 (+)
G41975 NA non-coding upstream 248764 12454495 ~ 12456795 (+)
LOC107197698 NA non-coding upstream 268220 12432027 ~ 12437339 (+)
G41961 NA non-coding upstream 377321 12327895 ~ 12328238 (+)
G42103 atpaf1 non-coding downstream 27113 12742141 ~ 12744624 (+)
G42154 NA non-coding downstream 133535 12848563 ~ 12859161 (+)
G42178 NA non-coding downstream 424761 13139789 ~ 13140167 (+)
G42181 NA non-coding downstream 541407 13256435 ~ 13284550 (+)
G42193 NA non-coding downstream 641631 13356659 ~ 13357230 (+)
G42068 NA other upstream 72130 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 364646 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 946851 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 995876 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 1125230 11571226 ~ 11580329 (+)
G42208 ier5 other downstream 733564 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 793992 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 902055 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 1095805 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 1355395 14070423 ~ 14134546 (+)

Expression


G42096(LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G42096(LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586) Expression in each Bioproject

Bar chart with 4 bars.
G42096(LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network