G42195


Basic Information

Item Value
gene id G42195
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13369304 ~ 13371805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56814
TACAGcaaacacttttattatttatttattacttatttattatggAAAAAGTAAATTACAGATGCTGTAATTAAAGAGAAACTGCAGATACAGTgggtaaatacaaaaaagcgCCCCCTGCTGCTTATTTGCCCATGCTGACTTCTTTCCATCATTAAAATCCCCTCCTGTGGGCACTCAGGTCTGGACTGGATGTTGGATGAGTGGAAGAAGATGATCTGCTCGGATGAGGCCTGTTTTCTTTTATGTGAAATATACTGTTCCTGTGTCAGATCCTCCTTAAAATTACAGGACTTCTGGAACATGCTGATGCCAGATACCACTGGACACCCGAGTAAATATCATCTGATATCAGCtatatataaaCACTGATACATGTACAGTAATTAAAAGCAGTGTAGTGCATTaactaattataattaaatcatCATAAATTAACAGACCTTTAGATCAATGTGTGTCAGATTCACATGACTGTTactttttcttcagttttgtgGATGATCACGTTCTCGTAAGCCTCATGGTGTTCACTGCTCCTGAAAAGCAGATGAGTCCAGTGTTATTCTAGAGAATAAAGTGTGAATTTTATAAAAACGAATATCATGAAAAACGAACCATCTGAATTCTTACCTGACTGAATCAAGATTTGTGCCATTGCTCATTGAATATTCATTACTGGTCACTTCAGTCTTCACTTCCTGACTGTCACTAAGAGAAAGATGAGAAAAGAAACATCtg

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56814 True 741 lncRNA 0.36 3 13369304 13371805

Neighbor

gene id symbol gene type direction distance location
patj patj,LOC107715056,LOC108245549 coding upstream 3983 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 274687 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 712190 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 939458 12420587 ~ 12429846 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding upstream 949661 12407546 ~ 12419643 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding downstream 81813 13453618 ~ 13465045 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 181107 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 190427 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 220823 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 294597 13666402 ~ 13673565 (+)
G42182 NA non-coding upstream 2444 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 12074 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 84754 13256435 ~ 13284550 (+)
G42178 NA non-coding upstream 229137 13139789 ~ 13140167 (+)
G42154 NA non-coding upstream 510143 12848563 ~ 12859161 (+)
G42209 NA non-coding downstream 100822 13472627 ~ 13475836 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding downstream 158547 13530352 ~ 13536026 (+)
G42389 NA non-coding downstream 627115 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 649838 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 684793 14056598 ~ 14073336 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 654276 12705559 ~ 12715028 (+)
G42068 NA other upstream 735875 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1028391 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 1610596 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 1659621 11669447 ~ 11709683 (+)
G42208 ier5 other downstream 76787 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 137215 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 245278 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 439028 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 698618 14070423 ~ 14134546 (+)

Expression


Co-expression Network