G42208 (ier5)


Basic Information

Item Value
gene id G42208
gene name ier5
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13448592 ~ 13450477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56827
tcaTTTCACAAAAGTTTAATACGTGATCACCACGTAAATTGTCATCATAGTAAATACCAAAATACATAGATTCATAATGCAACATCAGAGGCAGTATGTACAAGAACAATGTTACAAATGTACAGgtctttttaaaacaaagacaGAGAAAACCAGCACCCAATGTCTGGTAGACCGTTGTTGTGGTCAGTTCTTACATCAGCGTAACATTTAACTTTGTACAGATGTCATTAGCATAACATTTCACACTCGTCACCCATTCAGACTGCTGGAGTACTGAATGAAGCGACCACCCCCCTCTCTCCACTGCAGGGCTGTAAATGTTCAAATTCACTCCAGTGGCCTCCTCATTCCTTTGACACGGCAGGGCTCTACGTAGCAGTACCAGCATGTTCACATTCTTTCCTTTACAAAGGCATGTCCAAACACACCAGGCCCAGTTTGTGCTTGGTAGCACCACTTATGTAGGGGAAGTCccataccacacacatacacgcctCACCACGTGTTATGGGGGGAACCCAGTCTAGAAGTACAGCACAAAAATGGCCATGTGTGAATGTTACaggtttccttttttaaaaccaCACTTCCACCAAAGTTCTGTGATTGGTTTTTAAAAGGCCACGATGGCCGTGCTCCAAGGGTTCAGGTTCTTTAGCATTTGGTCACAGCAGATCTGCCCTGACCCTGAATCactgtcttctgtttctgctTCAGGCTCAGAGCTCTCCTTGGTTAAAAGTCCTGAAAAACTAGAGCCAAAGATTGTGATGAGATTAGAGACATTGCCCGTGTCCATCTCCTCCGCTTCCTCCTCAGAGGAGTTTGAGGAAGTCACCTTTGTCCGTTTTACAGGAGAGTCATTGCTGGCTGTCTTCTCAGCAGTGCGCTTCCTGTTTGAACAAGAGTGAGCTTTCGGTGGTTGCTGTGAATTCCCTTCTGTGACCGTGGCGGGGTTAGCATCCGCCTCACAGTCCGAAGAACTCACTTCAGCTCCTTTAGCTTCACATTGAGATTCACAGGTCACAGGAGAAGATGTGAGAGAAACATCAGTAGTAGAATCCTCTGAGGAAGACTCCTCTTCGGCCTGATGTTTGGAGGAGACGCTGTGGAGATCTGTGGAGTCTTCCACAGCCTGGCTGGTGTGCTGAACCTCAGGATCCTCTGGAACCACAGGAACCTCAGGATTCTGGTTGCAGTCAGTTGATGGGGACAGAGATTCCTCAGGGGCTGGAGTGAGTGGCTTCTCCTGGTTGGAATCCATCAGCTCCCACTCCTTGGCCTCAACATGCTGGGTGTTGAGGCAAACCCCACTGTAGTAATCACTCAGATACACTTGGCGTGCACTTCTGAGCACCAGAGACACCAGGAGGTTTTTGTGGAGCTTGATGCCTCCTCGTTGAACCCGGGAGTTGTAAATTTTCCCCAGGGAGATACTCATTATCCGATGGGCCTCCACTTTATACTCCATGGTCAGGCTCGATTCAGGAACACTCgaagcaaaataaatacaagcaGTTTCAAAGTTCAGCTCCAGTCAGAGAAGGCTTGTCAGCAGGCTTGTTCTCCTTCAAGTGTGAGTCTCATTGAAACATTGTCCATCCAAAAACGTCAAAAGAAATGGTCCAACAAGCTTTAGAAACACTCACTTGGTCttcaagtagtttttaaatgaaaataaaacctattttaaaataaaagaagccTTACAATTCCTCTAATTTAGGAAAAAATATGGTTCTCTACTCGTTTTATCAACTTGATACGATAAATAAAACCAACCGCCACATTTCTGTGGTTAAAGAACGTAATACTGATAATTCTATGTTATTGGGTTATACTATAAGCCTGTATTACCTTCCGTACGGTCTCTCTCCCCCAAC

Function

symbol description
ier5 Orthologous to human IER5 (immediate early response 5).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56827 True 1886 TUCP 0.45 1 13448592 13450477

Neighbor

gene id symbol gene type direction distance location
patj patj,LOC107715056,LOC108245549 coding upstream 83271 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 353975 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 791478 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1018746 12420587 ~ 12429846 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding upstream 1028949 12407546 ~ 12419643 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding downstream 3141 13453618 ~ 13465045 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 102435 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 111755 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 142151 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 215925 13666402 ~ 13673565 (+)
G42195 NA non-coding upstream 76787 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 81732 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 91362 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 164042 13256435 ~ 13284550 (+)
G42178 NA non-coding upstream 308425 13139789 ~ 13140167 (+)
G42209 NA non-coding downstream 22150 13472627 ~ 13475836 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding downstream 79875 13530352 ~ 13536026 (+)
G42389 NA non-coding downstream 548443 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 571166 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 606121 14056598 ~ 14073336 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 733564 12705559 ~ 12715028 (+)
G42068 NA other upstream 815163 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1107679 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 1689884 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 1738909 11669447 ~ 11709683 (+)
LOC103032215 NA other downstream 58543 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 166606 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 360356 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 619946 14070423 ~ 14134546 (+)
G42605 NA other downstream 1444585 14895062 ~ 14899248 (+)

Expression


Co-expression Network