G42209


Basic Information

Item Value
gene id G42209
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13472627 ~ 13475836 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56828
aataaaagcagcaaatCATGCTGAAAGTTCTCTTACCATTCTTTCATGGTACATATTATATACCATAATACTAATGCAGCAGCGTTCTGGATATTACAGATATGCAGAGGTACTGGATGAGAATCTGCTCAGAGAAAAACATCTAAATAATTTACTCTGCAACAGTTGGTGTTTATTATAGTCTGACTTCAGCTACTGTACCTATCGTCATATTGCATTCAGAACACGTGTAATAGGTTTGCAGTGCTGAAGGTTATAAACTGGATTTAACACTCAGCCTTTGAGTTTAAATACACACTTTCTTGAGTACCGGGTTTGTCGGCAGAGGGAGAAAAGAAGGGGTTAAACCCCTCACCCTCAGGAATCACTGCAGCTGGCAGGAGCTTCTTTGCGGCTGCAATAAAGCAGAAATgcaaacaacaagaaaacacCCTCTAAAGTTAGCATGAGGTGTTTTTATCATGATTCCTGTTAGTAAACATAATGTACAGCATGATGCCATCTCAGTACGTCTTAATTGGGGTTGTAAAGCTGGCATTTTTTAGCCAAGAGAAGGAAGTTGTTGTATTATGTTGGTTAGATTAAAGATCTGCATTcagtttactttatttaaatgtgtacaaaatacagtggtatgaaaacgTTTGGGCACACCTAATAATTTTcaagattttcctttataaatcattggtggttcagatcagcaatttcagttaaatatatttactatagtagacgaacacagtgatacttgagaagtgaaatgaagttcataggatttacagaaagtgtgcaataattctttaaactaaattaggcaggtgcacaAATTTGAGCACCCTTGTCATTTCATTACTTttaatacctttagcactaattattggaacacaaaatttgtttggtaagctcattgaccttGACCTTGATTACACAGGTgtatccaattatgagaaagggttaatgtggccaattgcaagtttttctcctctttgcatcttctctgaagagtggacacatgggagcctcaaaacaaaactctcaaatgacctaaaaacaaagattgtttaacatcatggttttagaggaaggatgcaaaaagctcaaatctcagagatttcagctgtcagtttccactgtgagaaacatagtgaggaaatggaagaccacaggcacagttttAGTTAAGACCTGATGtgtcaggccaagaaaaatctcagataagcagaggaaaAGGATGCTGAGTCAACAATCATAGTCAACCATAGTCAACAGACTAGCTTCAAAgatctacatcatcatcttgctgcagaagatgtcactgtgcatcgttcaactattctgcgcactttgcacaaggagaggccGTATGgaagagtaatgcagaagaagccttttctgagcacacgccacaaacagagtcgcttgaggtatgctaaatctaaagcacatttagacaagccagcttcattttggaataagattctgtggactgatgaaactataGTTATTATGAGTTATTTAGAAGGTGGTATGCATGGAGGGAGAAAAAACAGCATTCCAAGGCAAACACTTGCTCCTACAGTAAAATTTggaaatttggtggtggttccatcatgatGTGGGGCTGTGTGTTCAGTCCAGGTACTgagaatcttgttaaagttgagggatgcatgaattccagtcaatatcagcagattcttgagaacaatgtttaagtatCAGTGACAAAGTTAAAGTTGTGCCGGGGCTgaatacttcaacaagacaatgacgcTAAACACTGCTAAAAATAGTAAAGGATTTATACAGAtaaacaagtacaacgttctgaaatgatcatctcagtctaCCGaactgaatattattaaaaatctgtggtgtgatttaaagcgggctgttcatgctcagaaaccatcaaacctgactgaactggagatgttttgaaaagaagaattgttcaaaataccttcaaccagaagccagactctcattggaagctataagaagcatttagaggctgttacAGTATTTCTGCAAAacgaggatctactaaatattgaaaaatttatatatttttttctgttgggaTGCCCAAAATTATGCACTTGCTTAACTTTGTTTATAGAATTAtcgcacactttctgtaaatcctatataaacttcatttcacttctcaaatatcactgtgttcatttgcaatatgatatatttaaatgaaattgctgatctgaacaaccaatgaatTATAAAGGAAaaccataaaaataattatcaggggtgcccaaactgaCACTGATGTTATGCCATAGCCAGCCACATTGCCAGgcctttaacattacattaactGTTATCTATCACATCGATTAAttctatttaaattaaacatggtATTATTGCACACTTGCTTCTAGAGTCTTCCTGGTAGAACTGTACATCCTTgttaataaaatacacaaacacaaagttttttttatttttggcagaATCTGTGttgatgtatattttattgACATGGATTGGTGCAGACTTTGGAATGAAGTAAACTCAAAGCATCACTTTTTAGTTTGTTCTTCGTAGAAAGAATAGAAGAACCTAAACTACAGAAAGTTAGAAGCTTGAGAAAAGCACAAAGAAATGGAATTACAGTCCCAGGgccttttttttcagaattactGGAGGCAGAAGCTTAGTGCATTTCTTCACTCTCAGCCAGAACAGAGGAGCACCTTGGCTATGATAGAGAgcatgtcttgttttttttttatatatctccTGATAACAGAACAGAAGCTACAGCCTAGCTGTTCAGTTCAGTCAAGCTTTACGTCAGCAACAACAAGCTGTGTACCGGCGGAGGCCGAGCGTCAGTGTAATCTGCCAGTTAACGTTAGAACCAGCAGAGTCTAGTCTCAGAAACACTTTTCCCCTGGGTTTGGTAGCCGGCAGTTAGCGATGTGGTCGTCGGTGGCGGAGCACGCGGATGGAGGCTATGCTGTTCTGCGTCATCAGCCGAGTGACCAGCTCCAAACTCAGCCCTGCCACTTTCTCTCCATTCACCTCCAGGATCTCATCACCCACTCCCAGCAGGCCCGCGTACAGCTTCTGAGTACTGCTGTCGCCCATCTCCTCCACATACACACCTacagcagaaaacacacagaataaTACAGTGTGAGAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56828 True 3184 lncRNA 0.39 2 13472627 13475836

Neighbor

gene id symbol gene type direction distance location
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 7582 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 107306 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 378010 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 815513 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1042781 12420587 ~ 12429846 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 77076 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 86396 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 116792 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 190566 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 219020 13694856 ~ 13700883 (+)
G42195 NA non-coding upstream 100822 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 105767 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 115397 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 188077 13256435 ~ 13284550 (+)
G42178 NA non-coding upstream 332460 13139789 ~ 13140167 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding downstream 54516 13530352 ~ 13536026 (+)
G42389 NA non-coding downstream 523084 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 545807 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 580762 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 611073 14086909 ~ 14146357 (+)
G42208 ier5 other upstream 22150 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 757599 12705559 ~ 12715028 (+)
G42068 NA other upstream 839198 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1131714 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 1713919 11753887 ~ 11758708 (+)
LOC103032215 NA other downstream 33184 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 141247 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 334997 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 594587 14070423 ~ 14134546 (+)
G42605 NA other downstream 1419226 14895062 ~ 14899248 (+)

Expression


Co-expression Network