LOC103032215


Basic Information

Item Value
gene id LOC103032215
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13509020 ~ 13522257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56835
CCGGGCATCTCCCTCGAGCAGCTGATTCAGGCGACGTCACTCGGTTTCCCAGCAGGAGCTCGTCGCTGATCAGGAGAGGGGAGACGGTGTGTGGGAGGGTtccctgtttctttaaaaatggCGTTTGTTAAGAGCGGGTGGCTCCACAGACAGAGCACCATCTTACGTCGCTGGAAGAAAAACTGGTTTGACCTCTGGTCAGATGGCCGTCTTACTTTCTACGATGACCAGCAGCGGCGTGACATGGAGGACGAGATCCATATGAAGGTGGACTGCATCAATATCCGTAATGCCAGTGCCTGTAGAGGTAGgtcaaacatatacattttagtATAGAAATTTAAATGTAGCTTTGTCTTGTAGCTTTGACTCGCT
>TU56836
CACTCGGTTTCCCAGCAGGAGCTCGTCGCTGATCAGGAGAGGGGAGACGGTGTGTGGGAGGGTtccctgtttctttaaaaatggCGTTTGTTAAGAGCGGGTGGCTCCACAGACAGAGCACCATCTTACGTCGCTGGAAGAAAAACTGGTTTGACCTCTGGTCAGATGGCCGTCTTACTTTCTACGATGACCAGCAGCGGCGTGACATGGAGGACGAGATCCATATGAAGGTGGACTGCATCAATATCCGTAATGCCAGTGCCTGTAGAGGTAGgtcaaacatatacattttagtATAGAAATTTAAATGTAGCTTTGTCTTGTAGCTTTGACTCGCT
>XM_022670152.1
CTATCCGGGCATCTCCCTCGAGCAGCTGATTCAGGCGACGTCACTCGGTTTCCCAGCAGGAGCTCGTCGCTGATCAGGAGAGGGGAGACGGTGTGTGGGAGGGTtccctgtttctttaaaaatggCGTTTGTTAAGAGCGGGTGGCTCCACAGACAGAGCACCATCTTACGTCGCTGGAAGAAAAACTGGTTTGACCTCTGGTCAGATGGCCGTCTTACTTTCTACGATGACCAGCAGCGGCGTGACATGGAGGACGAGATCCATATGAAGGTGGACTGCATCAATATCCGTAATGCCAGTGCCTGTAGAGGTAGgtcaaacatatacattttaTTTCCTCCCAGAGCCTGGACCATGGCTCTCCAAGATGCCAGAATCAACACTgTGGTGGCGCCTCCTCAGTTTGGGTTTGCTCAGGAGGTTGTTGCTTCTGCTCCTCCGTCCTATGCAGAATTAAACCCCACTCCTCAGGTGTACTATCCAGACCAATATGGAGGCTATGTGCCTCAGCCTCCTCCCCCCTATACCAGCCATGTGGTGTACTCTGCAGGTGGGCAGCTGTATACATATGCCTCCCCGTATCAATACCCAGGAGCCTCCCCCATGCGCGAAGTCAACCACGTCGTCATCGAGGACCGCCGCCGCGATGACGCAGGAGACATGGCCCTCGGGATGCTAGCCGGTGCTGCGACGGGATTGGCTATCGGTTcccttttctctgtgttttaagGTGCCTGTAGAACTAAGACCCGACCTTTCCTCCTCTCCTTTTCGAGACCCCTCACAGTTCAGACGAGTGTTCTGCTACTGTCCTAACGTTGTTCTGCTACTGCAGCCCCTCTGCATCTTTAGAACTAAGTCTAATCCGTTAGCTGTGTCGCGGATGCGTCTGTGATCTGTTTGGCAGTTAATCCCTCTGTGCGTCTTAAAGCCTCATGGTAGCATTTACAGTCGGAGTGCAGTAGATGAAGATGACTATGactatgattatgattatgattgtATTGCACTTAACGTTTTGCCGCATATGAGGAGGTATGAAACCAAAACTGTGTTCAAATGCCTCAGGGTGGCTGTTCGTAAAACTGGGTCACCTGCTTTAGATTGCCTTTGAAGGTTACGAAAGGACTAAATGAAGAATGACTGGGGACTTATTTTAGTGTCTATAGGATTTAAAGAGAAATGACTGGCCTGTATCATCCAGTTCCATGCAGTCTTGATATTGATGGCTCTAGGAATAGGTAAAGAATGGgattgatgcaaaaaaaaaaaagaaaaa

Function

GO: NA

KEGG:

id description
K23857 PLEKHB; pleckstrin homology domain-containing family B

RNA

RNA id representative length rna type GC content exon number start site end site
TU56835 False 375 lncRNA 0.50 3 13509024 13517681
TU56836 False 338 lncRNA 0.49 3 13509061 13517681
XM_022670152.1 True 1280 mRNA 0.49 7 13509020 13522257

Neighbor

gene id symbol gene type direction distance location
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 43975 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 143699 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 414403 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 851906 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1079174 12420587 ~ 12429846 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 30655 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 39975 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 70371 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 144145 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 172599 13694856 ~ 13700883 (+)
G42209 NA non-coding upstream 33184 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 137215 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 142160 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 151790 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 224470 13256435 ~ 13284550 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding downstream 8095 13530352 ~ 13536026 (+)
G42389 NA non-coding downstream 476663 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 499386 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 534341 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 564652 14086909 ~ 14146357 (+)
G42208 ier5 other upstream 58543 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 793992 12705559 ~ 12715028 (+)
G42068 NA other upstream 875591 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1168107 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 1750312 11753887 ~ 11758708 (+)
LOC103034435 NA other downstream 94826 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 288576 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 548166 14070423 ~ 14134546 (+)
G42605 NA other downstream 1372805 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2456229 15978486 ~ 15984632 (+)

Expression


Co-expression Network