G42220 (LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111)


Basic Information

Item Value
gene id G42220
gene name LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13530352 ~ 13536026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56848
CAACAGCCACTTATAGCACTTATACTATAGTCTATAGTATACTACATACTATAGTCACTTAAAGGAAAAACTGAGGAGCCCCACTCCACTCACCTTGCATCTGAACCAGAAATTCAGTCTTGATCCTGCGAGCTGCTTCACTTTCGTTATCACTCCTGGATCCGCACAGGGAGTCAATCTCATCAATGAAGATGATAGAGGGTTTGTGTTGCCGTGCCATGCTGAAGAGGTTCTTCACTAACCTCTCACTCTCACCCAGCCACTTAGACACCAGATCAGAGGAGGAGATTGAGAAGAAGGTGGAGTTATTGGCCTCAGTAGCCACTGCTTTTGCCAAGTAGGACTTTCCTGTTCCTGGAGGGCCAAAAAGCAGAATGCCCCTCCATGGAGTCCTTTTACCTGTGAAAAGGTGTGGGAATTTGATTGGCAGGATCACCGCCTCTTTCAACGCCTCTTTAGCTCCTTCCAAGCCAGCAACGTCATTCCATTTAACATTCGGCTTCTCCATGACGATGGCTCCTTGAAGCTGACCCTGtagtttctttttctctgagTTCTCGCCATCATCACTTTCATTCCCTTTATCATCAGACACTTTCACAGGCTTGGAGGGAggtgctttctctttcttcttcaggtACTCCTTCAGCTGCTCTGCTCTGTCCAAGTAATCTGCACACTTAGCCCGGATGCTCTGCTTTGCCTTGTCCCCCTGAGCTTCATACTTCACCACATGTAGAAAGTACTGAACTGAGTGCTGGTACAGACGAAGAGCTTCCTCATAGTTCTTTGCCTTGTCCTCCTCAGCAGCTCTGGTGGCCAGGTCTATCGCTTTCTGTAGATTGGCCATTTGTAGTCGTGGTTTAACTCTTTAAAGTTGAAATttaatctacagtacagtaaacACAGCTGATATTCAGCTACATGTCTATTCCTACACCAAACACGttgtaaaatacataaacaatcTACTACAATATTCACTAAATCACTTTGTGTACTAGTTTCATCTAAACCTTTTCCTAGGTCTCTTCCGTGATGAAC

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56848 True 1044 lncRNA 0.45 7 13530352 13536026

Neighbor

gene id symbol gene type direction distance location
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 65307 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 165031 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 435735 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 873238 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1100506 12420587 ~ 12429846 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 16886 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 26206 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 56602 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 130376 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 158830 13694856 ~ 13700883 (+)
G42209 NA non-coding upstream 54516 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 158547 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 163492 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 173122 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 245802 13256435 ~ 13284550 (+)
G42389 NA non-coding downstream 462894 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 485617 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 520572 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 550883 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 624379 14160405 ~ 14160711 (+)
LOC103032215 NA other upstream 8095 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 79875 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 815324 12705559 ~ 12715028 (+)
G42068 NA other upstream 896923 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1189439 12334344 ~ 12340913 (+)
LOC103034435 NA other downstream 81057 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 274807 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 534397 14070423 ~ 14134546 (+)
G42605 NA other downstream 1359036 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2442460 15978486 ~ 15984632 (+)

Expression


Co-expression Network