LOC103037142 (LOC108429501)


Basic Information

Item Value
gene id LOC103037142
gene name LOC108429501
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13810833 ~ 13857361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57055
ggagcggtgtgtttatttatatattttttcctcctttcttcttgggtttatatgctttgagatcaactgttctgcaattgggttcaacaaccctctgggctaaagagctactagtctgtagcacccCATCCCAGTGACGCAGCCTCATCGAGTgcttttcagggtttttttttttgttagactTCAAAGAATGTGGAAAGAATCAGTTTTATCTTACCGTGATCTCCTGTTTCCTCCCCGTGCAGTATAtggtttaattaaatttaaatgtaaataaaataaatacataaataaataaatttaaatactgTCTTTTATTTCAGCTCCTCCCAGGAACACTTCAGTGAAGGTAATCCCCATCCGCATGGGTGCAGGAAGGCCAGAACATCACTATCTGCTGCAATTCAGTCAGCTTCCCTCCTCCTGCCATCATTCTGAGGAAGTTGGACAGTGGGGTCGATATCTACTCCCCCAACGGCACTTTTGTGCTGGTCAACCTCACACCAAATGACACAGGGCTTTACCAAGTCAACGTCACAAATGCCCTGGGCTACGAGACTGAGGTCTTCACTATTCATGTGATGGAACTCCACACGGCCAGCCCTCCACCCCACTGGAACTATTTTATTATTCCATTAGCTGGCTTGGGAATTCTGGCCTCAGCCGCTGTGGTGCTGGAGTACCTGCGGAGACAGCGGCTAAAGGGTTTCTACGAACTGAGCAAGAGCAAACCAGGCACAGCGTAAACGACACAGAAATGTTAGACCCTACTGAACTGAATCAGTCTCTGCTGAACTGCGTTAGAAATGAATCAGAGTCACTAAACTGACCCAGACTACAGTGATTTAAATCAGAGGTCTTATTGACCTGAACTGGATCAGAGTCACAGTACTGAATCAGACTCAATTGAACTAAATCAGAGACCAAACTAGATGGATTCAGACTCACTGAACTGAATCAGACTCCAAGCAACTGAATCAGAGTCACTAAACTGACCCAGACTACAGTGATTTAAATCAGAGTCCATATTGAACTGAATCACACTCTGCACTGAACTGGATCAGAGTCACAGTACTGAATCAGACTCACTACAACTATATCACACCTCTGTACTGAATCAGACTCCAAGGAACTGAATCAGAGTCACTAAACTGACCCAGACTACAGTGATTTAAATCAGAGTCGCTATTGAACTGAACACACTCTGCACTGAACTGGATCAGAGTCACAGTACTGAATCAGACTCACTACAACTATATCAGACTCCACACTTAGCTGCTTAACTGGATCAGAGTCAGTGTACTGAATCAAACACCTCTGTACTGAATCAGACTCCAAGTAACTGAATCAGAGTCATTAAACTGACCCAGACTCCAGTGATTTAAATCAGAGGTCTTATTGACCTGAACTGGATCAGAGTCACAGTACTGAATCAGATTTACTACAACTAAATCAGACACCATACCGAACTGGATCAGAGCCACTGCACTTAAATCAGATTCCACACTGAACTAGATCAAAATATTTGGCCTGAATCAGACACCACACTCAGACTGCATTGAACCAAATTGGACTGGTAAACTGTGAATCGGACTCTTCTGATCTGAACTGCACCCCAGCTATACAACTGCAGTTATGATGAGCCTTCAGTGGTGGACAGCTGTTGCAGGATAACAGTGCTCCCTGTGCAGAACGGGACAGTGAATCCTATGTGAATTCTATGCATTGCGTGTTCACATGAGGAGCCATATGTATATAAAGCTCTGAgagcactgtgtgtatatatgtgagaaacagagagaaagagataaAGAAGGGGGGGGGG
>TU57058
CAGACGTTACAAAATATAATTCCAATGTGGAACCAACGTGGTTTTTCTGTGATGTATATCAAAGAACCTACTGCAACATCTTAATTTcctatattttattctattattacagtcagaaaacattttttctaaatttttccccttttttgttTGCCCTGTAGAACTCCACACGGCCAGCCCTCCACCCCACTGGAACTATTTTATTATTCCATTAGCTGGCTTGGGAATTCTGGCCTCAGCCGCTGTGGTGCTGGAGTACCTGCGGAGACAGCGGCTAAAGGGTTTCTACGAACTGAGCAAGAGCAAACCAGGCACAGCGTAAACGACACAGAAATGTTAGACCCTACTGAACTGAATCAGTCTCTGCTGAACTGCGTTAGAAATGAATCAGAGTCACTAAACTGACCCAGACTACAGTGATTTAAATCAGAGGTCTTATTGACCTGAACTGGATCAGAGTCACAGTACTGAATCAGACTCAATTGAACTAAATCAGAGACCAAACTAGATGGATTCAGACTCACTGAACTGAATCAGACTCCAAGCAACTGAATCAGAGTCACTAAACTGACCCAGACTACAGTGATTTAAATCAGAGTCCATATTGAACTGAATCACACTCTGCACTGAACTGGATCAGAGTCACAGTACTGAATCAGACTCACTACAACTATATCAGACTCCACACTTAGCTGCTTAACTGGATCAGAGTCAGTGTACTGAATCAAACACCTCTGTACTGAATCAGACTCCAAGTAACTGAATCAGAGTCATTAAACTGACCCAGACTCCAGTGATTTAAATCAGAGGTCTTATTGACCTGAACTGGATCAGAGTCACAGTACTGAATCAGATTTACTACAACTAAATCAGACACCATACCGAACTGGATCAGAGCCACTGCACTTAAATCAGATTCCACACTGAACTAGATCAAAATATTTGGCCTGAATCAGACACCACACTCAGACTGCATTGAACCAAATTGGACTGGTAAACTGTGAATCGGACTCTTCTGATCTGAACTGCACCCCAGCTATACAACTGCAGTTATGATGAGCCTTCAGTGGTGGACAGCTGTTGCAGGATAACAGTGCTCCCTGTGCAGAACGGGACAGTGAATCCTATGTGAATTCTATGCATTGCGTGTTCACATGAGGAGCCATATGTATATAAAGCTCTGAgagcactgtgtgtatatatgtgagaaacagagagaaagagataaagagagaaagaaggtggGGGTGAAATACTTATAGAGCAAGAGTGTGTGGGACAGGTGTATAAAGTCATGTAAATATTAATTAGCAGAGGATGGTTTCTTACTAAGTGCAGCTACtgtctgtttttgtgttgttgtttggCAGTATAGTAGATTGAGAATTATGTGCACAGCACAAGTTAGACATGGTAGGCAATTTGGTTTTGTAAAAAATTGACTTCCTTTTTCCTCTCTGTAAAGCTTTTGTATGTTACATGTATCATTGTCTTTGTAAAAGTgtcatatttttcatttaaaaatgg
>XM_007240106.3
GAGTGAAATGAATCAGGCAGTTTTAATCTTTCTCATTTGTGGATATGAAGTGTTTCAGCATGCTTCCAGCTTTAAGTTTCACTCTGGCTGTGCTTCTGCCACTTGCAGCTGCTCTGCAGATTGACCTCACTCCAAAGAAGGCCCTGTTTAAAGTTGGAGACAGGGAGGAGCTGAAGTGCAGCGTGACCGAATGTCCAGGAGAAGTGAAATTCTCATGGATCGCTCTGGAAGACAAACCTCTCTATGCTGTATTCAAGTATTTATCTAAAGAGTCAGTTATGATTTTCAACAGCGTGACCAAACACCATGCAAACAAAATCAAGTGCACGGCTACGTGCCAGGATGTGTCCAAACAGGCCACGGCCACAGTGGAGGTCTACTCTTTTGCGAGGGACCCAGTCATCTCCGGACACGACAGCTTAGTTCCAGGAGTGGAGAACACCTTGACCTGTGAGATCACTGAGGTCCATCCAGCAGAGTATATGGAGGTTGAGTGGATGCGTGGGGGAACTGTGGTGCACAGACAGGACGGGAAGCATGGAGTCCAGACAGTCCAATCCCATTACACTTTTACACCACAGAGAGAGGACGATGGAGCGCAGATAACCTGCCGGGCCTCACTCACGCTACCTGATCTACCGCCGGATCAGCAAACCAGAGAGACCACTGTTTCCATTGTAATTCTATctgcTCCAGAAACCGTGGAAGTGTCCGGGTCCAGCACAGTTAGAGTCGGCTCTGCTCTCAGTCTGTCCTGCAAGGCGGACGGCAATCCGACCCCATTGTTCTCCTGGAGGGTTTTGAGGCCTGATGGTCAGTGGGTTAAAGTGGCAGAGACACGGCAGCTCTCTCTGATTAACGTGTCTCTGGCGGATGCTGGAGAATACGAGTGTGAGGCCAGCAACGGGGTCGGGAGAAAGACGGCCACTGTGACCGTCGCAGTTCACGGTCCTCCTACAAACACTGTGATTTCTCTGTCGACCAATGAGCCCAAAGAAGACGAGCTCGTGTCCATCTCCTGCACGAGCCACAGCGTTCCTCAGAGCCGTCTGGTACTGAGTAAGCTGCTAGATGGGGGGGAGTCTGAGCTGGCGTCTGGAGAAGGGCCTCACACCTCCGTATCGTACAGCTCTGCCCGAGCCAACAACTCAGGCCTGTACGTCTGCACAGCTTTCAATGACTACGGCAGCCAGAAGGCCAGCGTCCAGCTTACCGTTCAAACTTACCCCCTGGAGGTGACCATGCATCCAGACGTGAGTGTGATCACACTGGAGCGAGGGTCATCACTCTCGCTGTCCTGCGAAGCCTCGGGGTGTCCTCACCCACTCTTCACCTGGACGGGTCTGCAGGATAAGCCACAGTACAGACAGAACAACAGCCAGACAGATATCTCCCAGCTGAACTTGGAGTCTGTAGAGCCGGATGATGAGGGAGCTTTTATCTGTGAGGTCAAGTGTGGATCTGTGGTGAAGTCCAAACAGACAGAGGTGAAGGTTTTCTCATTTACCTCAGATCCTACCATTGAAAGTTCTGGATATTCTCTGGAGGGTGAGATGACCAGTCTGATCTGTGTGGTTCGCGACGTGTTTCCAGCCAAGCTTTTCCGTATACAGTGGCTGGATGGAGAGAAGGAACTGCCCTCAGAGACCTTTGTGGATGGACTGCAGAACCTCAGCTCCATCATCTTCTATCAACCGCAGAGCAGCGTTCAAGATACGACTATTACATGTAAGGTTTCACTACAGATGGATGGAGTACCAGCTGCGCTTACAGAGAAGACGACATCTGTCACCTTGGCAAGGCACTACACCCCCAGACAGACCACCATCACTGTGAGTCCACAGGAGGAGCTGAAGGCAGGGGAAACGCTCAGCATCTCCTGCCTGACAGATAGTGCTCCAGAGGGGCATGTGTTTTTGAAGAAGGTGGTGGATGGTGAAGAGACGAAGCTAGCATCCAGTCAGGGCACTCGGACCTCTTTCACCATCCCTGCTGCCGAGCTCTCTGATTCTGGGGTCTATGTGTGTGAAGCTGTCAATCAATACGGCAGTAAGAATGCCAGCGCCCAGATTACTGTGCAAGCTCCTCCCAGGAACACTTCAGTGAAGGTAATCCCATCCGCATGGGTGCAGGAAGGCCAGAACATCACTATCTGCTGCAATTCAGTCAGCTTCCCTCCTCCTGCCATCATTCTGAGGAAGTTGGACAGTGGGGTCGATATCTACTCCCCCAACGGCACTTTTGTGCTGGTCAACCTCACACCAAATGACACAGGGCTTTACCAAGTCAACGTCACAAATGCCCTGGGCTACGAGACTGAGGTCTTCACTATTCATGTGATGGAACTCCACACGGCCAGCCCTCCACCCCACTGGAACTATTTTATTATTCCATTAGCTGGCTTGGGAATTCTGGCCTCAGCCGCTGTGGTGCTGGAGTACCTGCGGAGACAGCGGCTAAAGGGTTTCTACGAACTGAGCAAGAGCAAACCAGGCACAGCGTAAACGACACAGAAATGTTAGACCCTACTGAACTGAATCAGTCTCTGCTGAACTGCGTTAGAAATGAATCAGA

Function

GO: NA

KEGG:

id description
K06527 VCAM1, CD106; vascular cell adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU57055 False 1825 lncRNA 0.43 3 13836172 13857361
TU57058 False 1527 lncRNA 0.40 2 13836869 13838554
XM_007240106.3 True 2574 mRNA 0.52 11 13810833 13837260

Neighbor

gene id symbol gene type direction distance location
gpr88 gpr88 coding upstream 5727 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 17114 13710046 ~ 13793719 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 109950 13694856 ~ 13700883 (+)
trmt13 trmt13 coding upstream 137268 13666402 ~ 13673565 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding upstream 198421 13592628 ~ 13612412 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 4356 13861717 ~ 13891132 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding downstream 123830 13981191 ~ 13984481 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding downstream 132479 13989840 ~ 13998425 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 449362 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 455137 14312498 ~ 14333039 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 274807 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 334997 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 439028 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 443973 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 453603 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 141559 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 164282 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 199237 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 229548 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 303044 14160405 ~ 14160711 (+)
LOC103034435 NA other upstream 188791 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 288576 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 360356 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1095805 12705559 ~ 12715028 (+)
G42068 NA other upstream 1177404 12632816 ~ 12633429 (+)
eps15l1 eps15l1 other downstream 213062 14070423 ~ 14134546 (+)
G42605 NA other downstream 1037701 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2121125 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2583570 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2959240 16816601 ~ 16819251 (+)

Expression


Co-expression Network