G42389


Basic Information

Item Value
gene id G42389
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13998920 ~ 14002697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57070
agaaGAAACAGTGGAGAATGGAGATGATGAACCAAaagcaggacacacacacacacacacacacacacacacatacatgcatcaCACTCGTCCATGATCCGTGTATgcatgtgtatgagtgtgtgaaggTGTCCAATGGACGGGATTTGGAGGAAATGCCACGGAATGACTGTGAGTTTTAGGATTTCCCATTTTCAGAGAGGAGAGCACTTTAAACACGGGGTCCAGTGGGGTCTTTTCCCCCCACTTGACCCGTCACGGACAGATGTTTCCAGCCGGTGCTATGATTTTAACGGATTTTAATGGATTTGATGACAGGAGCTCTCGGGAACCAAAGGAAAATGTATCATAGATGCCATACCTCTGACACTAGGTGGAAGATGAGGAATTGAAAATAAGAGATTACATTGGGCACTTCTACAAAGTGGGtgggttattttttttcaattttattttaattttgcttttttggggggttatattttctttttagttttaaaatatcTACTTTATATCACTTATGCATATAAAGACAAGTTTGTATCTGTACAAAAAGACAAAGATGCAGTGTCTACGATTTTggaaaaggataaaaaaaaaaaaaagctttcttaAAGTGAGGGGCTGTTATGGAGGctagtttttcttgtttttaagtttgttttttgtgtttctttttgtttttgatttgcGCTGACGCAGATCAACACCCTTTTTAACAAATATCAGGAACTCTATGTTCACTCTGGATGTTTACCATTATTCCATACTAAGCTGTTGGACCTTTGGGTACCTTCACTTCACAAgtgcagcaaaaaaaagaaaaaagaagaaaaagacgacaaaaaacacacccaaaaaaagagaaacgcGAACATCTCCTCTACTCAGTGTAAATACCTATGCCTCAGAAGAAGCAGTAGCATCAAAACGTCAACTGTGTCATCGCAGCGTCAGTGTTACTGAAGCCAGGTCAGCGGAAGCAGCGCATGGCGATGTTGCGGGTTTGATTTTTGTACTCCAGTGCAACCTCATGAGAACACAGCCAAGATAGATTATTCAGACTTTATCTCCCTTCTGAACTTCGGAAACGGGAGGAAAACAAGGTATGTTTCGTTTAATCGGTAAGTCTAGGTGAAGGGTTtcggcctgtttttttttttgtttgtttttttgttaaactgGCCGACGgtgaggtgatggtgatggACATATCTCTGTATCAAatatgtgtgtattgtttgctctgtttttatttaaatttttagtacaatgcaaaaGCAAGGGATCTCAGTATGTCAGTAACCAAGCATTCCAAGTGTTTTTACAGAACTACAAACTAAATTTGGAGTTTAGAGCTCATGATCTCGTCCAGCGCATTAAGCCTTCGCTAATCTGACGCAGAAATCTCGTCTCAGTTCCTCAAAAGTGCTGGGATTCGAAGTAGGGGAGgggatatatgatatgatatattgtaaaacacaatatttatcagAATCTACCTGATCTTAGACAAAGATTTGTTTCCACCTGGTCACTTAATGTATCAGTATCTGGATAAGaggagggattttttttttttgtaaaggcaGCGGCCCTAATTATAAAGAGCTGCTGGAACCTCTGCAAGACTCTTTTTCACCAGAGACCACCTCAGAGGCCTGACCTGGTTTAGTACACAAGTAATAAATGCTGTGCAACAAGCAAATATGCATGTTCTTTTCCGTCCCACACAGCAATAACATTTTGGTGTAAAATCATGTGGTTGCCATCTAATCAgaatacaatccagatactagtcATATGAAGTGACCAGTGATGGTCCCAATTGCATActcatttataattatattataactaTAATTTTGAGTATGAAGTATAAATGAAAGTGTCAGTTTAGTTCAAAGTTCATCGATATacatcttttttaaatatccaaGATTTATATTGTCGCtgcccagtaaaaaaaaaaaataaaaaaaaacagtcatgtgcaaaacagcaactttacaagagagtGAAAAGGCCTTCTTAAAGGAGAACGCCAGTGTAAAATTATCTTTGGGtgtaataaaacatggtaaacagtGCTAACCtatgttgaatagcccacccctgctctcccacagctttctgagatccagcaattttgtgcattttgtccAAATAGGCtagaatgggttttaatggggcatattttgccccagcagataaatcactttgtacactgttatccaggctcaaagtaattccacacctcattggtggAATCCGaggagccctgacatttaaaacaaagcattaataactttcaaagtgcagaagaagtttattaaaaaacactgtttacaacccataACGGAAGCTgaatgctaaaagctaatgctacattCATTTTGTAGCTTCACAGCTGTGGTTTATTTTCAAAAAGGAGAATAAAGCATGTACAGATGCTAAACTGTTTTATCTAACCTTATGTACcaattcaaatttaaaaccCTTCAATTCACCCTACCTTTTGTAGTATGAACACGCATGTCATTTtgctctgctgagaagcgcagaagctcTGAACTACCAATcctccaaagtcagagcgcagttggcacttaaagggaatggcaaatgaAAAGTTTATGGGTTTGTTTCACGTTAcccctaaaacacacccatgattaataaagagaattagttTATGCCTTTGTTACCATAGGAAATTAAATGATCATATTACCCACCCCTTCGCTCGACCACCTGATGATCCTCCAGCACTTTTGCGGAAACTGTGCCCtttgccttttctttttttttttttttttgatttcaaagctttaaaataacatttagaaTAATCGTGTTTATGATGTAAATAATAGTACTATTTAAAGTTTCTAATAACCAGTACAGCTACTGCGGCTCAATGGCATTGACTGAACAAGCGTTCTGAATGAACGCACCACAGTGTTTCACAACCGAAGTCGTTCCTACAGTTCCTTTACAAAGCCAGCTGTTCGAAATGACCTTCCAAGTGTTATTTCACCACATGTTCCAACTGGGCTCACTTtgtgctagtgctaatgctgcagaGCTAAAGTGAAACTTTAGTGATTTGTTTAGAAGTACAAGacgagaaataataataaaaaaattgccaGCTAGTGTTTTTGATCATAGCTTAAAGCTGTTTCTTAAAGGCACGATAAACAAAACGTCTTTTAAAGTCAatgagaaatatataaatatatactaaaccatgttttccttttcttttatgCATTTCATGCATTTCTTAGTGGTGTCACAGTAAAACAGGGAATCGTTTAAGCTAGTTATACATTTCATTCTGTGGTAGGTGGAGCTGAAGGGAGGggatgattataataataaaatctgtgATTGAATATTATAATTCACCCCACTGTCTgcacagtgacatcatcacagTAAAATCATAAGCTTTTAGTCCCCAGAATAAGATATTCCAAGATATTCCATGCTTTAAGTGCAGAAATGTTTCGGTATGATGTGTTAGACTGATAAATTAGCCACTACATTTATGGCTACACTAGCTGTTTGTCTATTTCTTTACTTTGATGCCTTCAAAGTCATCTTTTGAga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57070 True 3618 lncRNA 0.37 2 13998920 14002697

Neighbor

gene id symbol gene type direction distance location
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 495 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 14439 13981191 ~ 13984481 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 107788 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 193814 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 205201 13710046 ~ 13793719 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 304026 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 309801 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 331398 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 356512 14359209 ~ 14412035 (+)
bsg NA coding downstream 459953 14462650 ~ 14480454 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 462894 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 523084 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 627115 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 632060 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 641690 13356659 ~ 13357230 (+)
G42386 NA non-coding downstream 18946 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 53901 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 84212 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 157708 14160405 ~ 14160711 (+)
G42496 fam32a,LOC107757479 non-coding downstream 300721 14303418 ~ 14306941 (+)
LOC103037142 LOC108429501 other upstream 141559 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 376878 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 476663 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 548443 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1283892 12705559 ~ 12715028 (+)
eps15l1 eps15l1 other downstream 67726 14070423 ~ 14134546 (+)
G42605 NA other downstream 892365 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1975789 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2438234 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2813904 16816601 ~ 16819251 (+)

Expression


Co-expression Network