G42442


Basic Information

Item Value
gene id G42442
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14056598 ~ 14073336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57143
GGTACGGGTGGCCTTTCCCGAATGAGTATTCAGCTCCACTGTCACTCCGAGGTGGTGAAGCTGTTTAACGGTGGCATCGATCACCTGATTCTGCTCTGAAACAGCAGACCTCTGGTCCAGGAACTGTGCTTTAGGTGTGCGTTTATATGGAGGTGAACACTCGGACTGCAGAGGTGACAGACTGTGTCTGTGCTGAGGGTTAGGTACATCTCGTTCCACCACTGTATCTTCAGTTGCAGAATCCTGGAGACGACTGTTCACCTGACCATGTTGGTCTTCAGAGACGTCCTCTCTTTCTGGAGACTGAGGTTGGTAGTACATGCTTGCACTTTCCCCCAGAACAGGACTCTGAAAGGAGGGCATTCCTACATTTGATGATGTgTCATGTTGTGGTGATCTTGAGGAGTGGAGAGGTGTTCCAGGGCCCTCTTCTTCTCTACTGTGGTTGACTTCATCACAGCTAAGTCTTGAGGAAACAGAGCTACTGTCATTACCACCAGTCTGCCACTGAGGCTCAGGAGGACACTCCAGAGAAAGGCCACCATGTTTAGTGTCCAGATCAGGACCACTCCAGAACAAACTGGCACCTGTTCCTACTGCAATGCTGACACTGGTCTTCTTTTGGGGCTcagaaactgctgctgatgtttgAGTGACTCGTTCCAACTGATGATCCACAGGTGCTGTTTGTGAGGGCTCAGTAACCTTACTCTGGGCTTCAAGAAGCTTCTGGATCTGAGCTTGCAGTTGCTTTAGCTGCCGGTCTTGCTCAATCAGCATCTTGTAGGCATCAGCAGGTAGTAGGCCCATACCTCCCTCTAGTGGAGGAACTGCAACAGAACTGGGCTGGCCAGGAAAGCTTGTCTGCATCTGGCAACACTGGGCCTGGCAGGCGGCTGGTATTCTGTGCTCCAGTGCGCCACTGCTGGGCCCATGTGATGGTGAGCAGTGCAGGGGAACACTGGCGTGGCAGACAGGGCTCTTAGTGGGAGACACATGGCAGCCTAAGGACTGTCGTGTTGGAGATAGATAGCAGTCCCTATGAGGGCTGCTTTCAGTGGAACAGAGAACTGGGTTGCTGGAGGCTGTGTGTGCAGGATGAGCATGATGaagaggaggtggaggaagagaaggagTCCCCTGCCAGGTATTGTTTTGATACACGGGCATGTGGCCATGGTGAGTAGGGCAGCAGTTGCAGGTGTTGATGGCAGGGTTGGAAGCAGGGGTGCTGTGGAAGAGCCTATGTTGAGCCGGGTGCATCATGGGAGTTTGTTCTGGAATGACGGAGGCCTTTCTGGAGCCACTGTGGCTTTGTGCTGGTGGCCCAGATGGTGAGGATGGATGAGGGTGGGGCTTACTCACAATATCCTGCCCAGATCTCTGCATGAGCTGATGGAACGAGCTGTTTGGTGAAGAGCCAGATTTGAGAGAGGTCGTGGATGAGGCTGAAGATGAGGCTGAGGACCCGTGGCTGGATCTTCGACCGGTAGAGGGAACATCTCTCTTGCCTGCTAAAGACTTTGGTGTTTGATGTGCCGAAGTAGACTGTGTTCTATTAGGTTTTGGGTGGGAAAGCACTGGAGTCAGTGGTCTTCTGATAGGGGGTGGTCCAGCCATTCCACTCTGAGCTGGTGGTGGTTGTGGTCGTGGTCCTGGTCCAGTTTGTTGATTAGCACTTCTAAAGCTCCTCTGATGAGTATTCAATTGGGCAGAATGAGGAAGTGTGTGATCATATGATTCCATTATCTTTCCATCAAGAAAGCTGCCGTCTGCTACCATAGAGAGCTCAGGAACTGAGGGATGGACTTGTCTTGCCTGCTGGCTAACAGGATGAGGGTTAGGAGAAGGCCGTGGTGAAAGATCCTCGTCTTCCACTCCTGAGTCATGATCACTGGAGGACAGTTTGTTTTGGGCTGTCGCTGAGGACGCAGCTCTAGTATTCCTTGGTTGTGCTGAACGAGACAACACTTCTTTAAAGAGCTCAGCCTCCCTGCTCTGGTGGTCGGTACCGAGCTCAAACAGCAGGGAACGTCCTTCTGATGGTTCTACATTCTTGTAAAGTGTGACCGTTTCCGTGCTGGTAAGAAGATGAAAGCTCATATCCATCATCCCACCACGAAGTTTGCACTGGTAGAATTCAGGCTCtctgtgagtgagagagtagaGGACCACCAGGAACGCGTCATTCTCTGACATCACTCTGTCCTGGAGGGAGGAGCTGTACAGGTACCTCAGACACCACGCCCACACCAAAGGATTATGAATGTGTGTAACTCCACTCAGCCATACTCCTACAAGAGGCAGAGTGTAGACTTTGGGGTCTGACTCCAGTATGAGGAGCAGTTTGCGGGTTTGGTCCATAGTCAGGAATCCTCGCTTCCTCCCTGCAGAGTGCAGAGGCTGAGCGATGCTGACAAGGCTGCTCAGGTTCCTGGCCAGTGCAGTAGGGATGATGGGCACTGCCCGAACAGGAACAGCCTCCAGCGAGTTGGCGAGTGTCAGACCTGCCCAGTTTAACCCAAAGCTCAGCCGGTCCATGTTCTCCAAGCAGCTGAGACGAGCCCGCAGGCCCAAAAGCTTGGACAGCTCCAGAGTttctctgctgctgcagcaatgctggagcATCTTAAACGAGACGTCAAAGTCATCTGCAGAGTACACAGTGCTGTCAGCAACAGTCTGAGCTTCAAATAAGCACGGCACAAGAACGTCCCCAGGGAGGAGGGCAGTTGGAGCCTTCCCAGGGCAGCCAGGCTGCTCTCTGCCGGGATCAAATCGATCCAGGGTTAACGTCACACCTTCCTCATCACCGTCCACAGCCAAAGTTCCAATGAAGAAACAGGAAAACTGCAGCATTTTACTTTGTCGAGCGTGACGATGAGCCAGACGCAGAGCTTTCTCTAGAAGAAGCAGTCTAGGATTTCTGTATAATGAAAGGTGAACATGGACAAGATCACCATTTGGAGTAGGATCCCAAAGGTGCATTTTAGATTTGGGGAATGTCAAGGGACCGATGCCACTCTCTGTCAACCTGGTGTTTTGTACAGTGTCAGGTCTGCACACAGCCTCCAACACATGGGAGGGCAACCCTCTCAGATTCACCTGAACTCCATTCATTCTTCACAATTCTGTTTTACACCGTTTGTGTCAAATTCAGACCAATTTATCGCATTTTCTCCGCTGTTTCGCAGGAACGTTCACCAGTCTGCTCCACCCACAGAGGCTAACCGGCCGACTCCTGCCCGAACGCCGCGGTTTAAACTCCCGGTTCTGAAGGCGGTAAAGTGGAATCAGGTCTGGTGAAATTAGTGAATGGTTCACTTCACTCGACACTCGGAAGCATCTTCGTATCCTGGCAGAGTTTTTGTGAAACGTGTTGTCAACAAAACAAACGCGCCCATGTTAGTGAATGAGCACCGACTCGAAAATCAACCGTGGC
>TU57145
GGTACGGGTGGCCTTTCCCGAATGAGTATTCAGCTCCACTGTCACTCCGAGGTGGTGAAGCTGTTTAACGGTGGCATCGATCACCTGATTCTGCTCTGAAACAGCAGACCTCTGGTCCAGGAACTGTGCTTTAGGTGTGCGTTTATATGGAGGTGAACACTCGGACTGCAGAGGTGACAGACTGTGTCTGTGCTGAGGGTTAGGTACATCTCGTTCCACCACTGTATCTTCAGTTGCAGAATCCTGGAGACGACTGTTCACCTGACCATGTTGGTCTTCAGAGACGTCCTCTCTTTCTGGAGACTGAGGTTGGTAGTACATGCTTGCACTTTCCCCCAGAACAGGACTCTGAAAGGAGGGCATTCCTACATTTGATGATGTgTCATGTTGTGGTGATCTTGAGGAGTGGAGAGGTGTTCCAGGGCCCTCTTCTTCTCTACTGTGGTTGACTTCATCACAGCTAAGTCTTGAGGAAACAGAGCTACTGTCATTACCACCAGTCTGCCACTGAGGCTCAGGAGGACACTCCAGAGAAAGGCCACCATGTTTAGTGTCCAGATCAGGACCACTCCAGAACAAACTGGCACCTGTTCCTACTGCAATGCTGACACTGGTCTTCTTTTGGGGCTcagaaactgctgctgatgtttgAGTGACTCGTTCCAACTGATGATCCACAGGTGCTGTTTGTGAGGGCTCAGTAACCTTACTCTGGGCTTCAAGAAGCTTCTGGATCTGAGCTTGCAGTTGCTTTAGCTGCCGGTCTTGCTCAATCAGCATCTTGTAGGCATCAGCAGGTAGTAGGCCCATACCTCCCTCTAGTGGAGGAACTGCAACAGAACTGGGCTGGCCAGGAAAGCTTGTCTGCATCTGGCAACACTGGGCCTGGCAGGCGGCTGGTATTCTGTGCTCCAGTGCGCCACTGCTGGGCCCATGTGATGGTGAGCAGTGCAGGGGAACACTGGCGTGGCAGACAGGGCTCTTAGTGGGAGACACATGGCAGCCTAAGGACTGTCGTGTTGGAGATAGATAGCAGTCCCTATGAGGGCTGCTTTCAGTGGAACAGAGAACTGGGTTGCTGGAGGCTGTGTGTGCAGGATGAGCATGATGaagaggaggtggaggaagagaaggagTCCCCTGCCAGGTATTGTTTTGATACACGGGCATGTGGCCATGGTGAGTAGGGCAGCAGTTGCAGGTGTTGATGGCAGGGTTGGAAGCAGGGGTGCTGTGGAAGAGCCTATGTTGAGCCGGGTGCATCATGGGAGTTTGTTCTGGAATGACGGAGGCCTTTCTGGAGCCACTGTGGCTTTGTGCTGGTGGCCCAGATGGTGAGGATGGATGAGGGTGGGGCTTACTCACAATATCCTGCCCAGATCTCTGCATGAGCTGATGGAACGAGCTGTTTGGTGAAGAGCCAGATTTGAGAGAGGTCGTGGATGAGGCTGAAGATGAGGCTGAGGACCCGTGGCTGGATCTTCGACCGGTAGAGGGAACATCTCTCTTGCCTGCTAAAGACTTTGGTGTTTGATGTGCCGAAGTAGACTGTGTTCTATTAGGTTTTGGGTGGGAAAGCACTGGAGTCAGTGGTCTTCTGATAGGGGGTGGTCCAGCCATTCCACTCTGAGCTGGTGGTGGTTGTGGTCGTGGTCCTGGTCCAGTTTGTTGATTAGCACTTCTAAAGCTCCTCTGATGAGTATTCAATTGGGCAGAATGAGGAAGTGTGTGATCATATGATTCCATTATCTTTCCATCAAGAAAGCTGCCGTCTGCTACCATAGAGAGCTCAGGAACTGAGGGATGGACTTGTCTTGCCTGCTGGCTAACAGGATGAGGGTTAGGAGAAGGCCGTGGTGAAAGATCCTCGTCTTCCACTCCTGAGTCATGATCACTGGAGGACAGTTTGTTTTGGGCTGTCGCTGAGGACGCAGCTCTAGTATTCCT

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU57143 True 3442 lncRNA 0.52 16 14056598 14073336
TU57145 False 1947 lncRNA 0.52 6 14056598 14061591

Neighbor

gene id symbol gene type direction distance location
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 58173 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 72117 13981191 ~ 13984481 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 165466 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 251492 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 262879 13710046 ~ 13793719 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 233387 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 239162 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 260759 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 285873 14359209 ~ 14412035 (+)
bsg NA coding downstream 389314 14462650 ~ 14480454 (+)
G42386 NA non-coding upstream 31202 14021643 ~ 14025396 (+)
G42389 NA non-coding upstream 53901 13998920 ~ 14002697 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 520572 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 580762 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 684793 13369304 ~ 13371805 (+)
G42446 NA non-coding downstream 13573 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 87069 14160405 ~ 14160711 (+)
G42496 fam32a,LOC107757479 non-coding downstream 230082 14303418 ~ 14306941 (+)
G42527 NA non-coding downstream 304142 14377478 ~ 14378030 (+)
G42521 NA non-coding downstream 338953 14412289 ~ 14413746 (+)
LOC103037142 LOC108429501 other upstream 199237 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 434556 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 534341 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 606121 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1341570 12705559 ~ 12715028 (+)
G42605 NA other downstream 821726 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1905150 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2367595 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2743265 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2875044 16948380 ~ 16950360 (+)

Expression


Co-expression Network