G42446


Basic Information

Item Value
gene id G42446
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14086909 ~ 14146357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57163
ttttttttttttttttttttttttgTAGATATCTCAATTAagtttaatatgtacagtacatacacTATTTACATTGCATAAATTATGTACAAGTCAAAAGACTTTGTTCTGAAGACACGTTTGTAGCCCTTGTCACGTCCAGTCTGGGTGAACGCGGGACAGTCTggaatacacttaaaaaaaaaaaaaaaactcgtaGAAACCACTGAAAAAATAGAGACCCTGATTTTACAAGTTAATATATGCAAGTAAGTAAGCTGAGCCAAAACATTCAGTCTCGTGACTTTTTTTATGGCCGTcttagaaaagaaaagaaaaacaaaacacaagcttatttcttctctctttttggaaatggaaaaaaatatcaaaaaacagTTGAATACATTAAACAACTTCAACACATTTATGGCACTTGAGACTTTTGAAACTTGAGATGTAAAGCCTGCATggaatgtatataatatattttttatatttatatataaaacaaggCACTTTGTTCATCGACTTGACATtctggagttttttttcttaagcaagtctctctttcttccattttttttctctttagctTTTGTTCTACTGATTGATTCCAGTTGCGTCAGAGGGGTGTAGGTAGTAGTAGGTCCAGCCTAACGTTGTCCAGCCTaaggttttttcttttttttgctttttgctttaAAGCTCCTTGACAAACAagaagaaacaaacacacacaaacaccaaacaggcactttttgttttttttttgtctctgtgaagaaaataaaagtagtaCCAGCTACACGATATGAGAAAACATTGGTCATTGGTGCTTTTTGGCGTGGGCACCACGTGTCCAGTCTGTTCGTGCTTTGTCCCTTATTAGAGTCAGTCTCTTTatcaaaatactgaatactgaatagaTAAGGGGTACaaaaagtagaagaagaagatgctgctgctgatgatttGGTCCCCCAGCATGTGTCTTGAGATGCTGTTTTTGTTCATTGGTTCTTAGTTCAtagtttatataattaatagttTTGAGTTTGTTGTGCTTTGGTCCAGGGAAAGTCCTACAGCTCCTACATGTGCCTCTTCATGTGGAGGGCCAGGTGGTCGGACCTGGAGAAGGCGCGTTCGCACAGGTGGCACTGGAAGGGCCGGTGGCCGGTGTGCTTGCGGAAGTGGCGGGTCAGCTCGTCGGAGCGGGCAAACTTCCAGCCGCAGCCTTCCCAGCTGCAGTGATACGGCTTCTCG

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57163 True 1248 lncRNA 0.39 2 14086909 14146357

Neighbor

gene id symbol gene type direction distance location
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 88484 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 102428 13981191 ~ 13984481 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 195777 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 281803 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 293190 13710046 ~ 13793719 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 160366 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 166141 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 187738 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 212852 14359209 ~ 14412035 (+)
bsg NA coding downstream 316293 14462650 ~ 14480454 (+)
G42442 NA non-coding upstream 13573 14056598 ~ 14073336 (+)
G42386 NA non-coding upstream 61513 14021643 ~ 14025396 (+)
G42389 NA non-coding upstream 84212 13998920 ~ 14002697 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 550883 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 611073 13472627 ~ 13475836 (+)
G42469 NA non-coding downstream 14048 14160405 ~ 14160711 (+)
G42496 fam32a,LOC107757479 non-coding downstream 157061 14303418 ~ 14306941 (+)
G42527 NA non-coding downstream 231121 14377478 ~ 14378030 (+)
G42521 NA non-coding downstream 265932 14412289 ~ 14413746 (+)
LOC111192557 NA non-coding downstream 391964 14538321 ~ 14560369 (+)
LOC103037142 LOC108429501 other upstream 229548 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 464867 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 564652 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 636432 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1371881 12705559 ~ 12715028 (+)
G42605 NA other downstream 748705 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1832129 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2294574 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2670244 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2802023 16948380 ~ 16950360 (+)

Expression


Co-expression Network