G42496 (fam32a,LOC107757479)


Basic Information

Item Value
gene id G42496
gene name fam32a,LOC107757479
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14303418 ~ 14306941 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57216
TCTGTGTGGTACTACAGTTTATTAGTCTGCaagtataaatattacattttacatccaAAAACTCTAATAGCAATTGTAAAGTGAAAAATGTACAATGAATCAGGCATTTTTAGAGAAACTTAGAAAACAATAATCATAACACTCCTTCCAAACTTCTTCCCAAATTCAAATCAGAAACTGATCACGATGGATGCCCTTCTACCAAGTTAAAGCAGAGAGTACAACAAATGGTACATGGTGATACATGAAACATGGTGTATATGAGCATCGGCAGACATGTGGCAAAGTCAATAAACACTTCACagatgtggggggggggggggattgtttaataaaacaaaaaaaaagaagcaacaaTAAAATGGCATCTGTGGTTGAAATCCACCGTCACACTGATGTTCATCATCATGAGATCCTCGTTATTTTGTCCAGCTGACTTTAGGAATGTCGTAATGCTCTGTCAGTGTGTCCAGATGTCTGTTGAACTCCTCAACTCTCCGCTTGTGTGTTTTGGAGGCTTTGTTCAAAATCCGTTCCATTTGTCTTTTCTCCTGTATTTTGTCGAAGGCTAACTGGGCTGGTGTCCTTTTGTCAACATAAACTTTCTTGGTCTCCTCTTCTTCATTTTGAGCAGTCAGCACTTGCTCCTCCAGATGCTTTCTCTCCTTgtccttcttctttttcTTTTTCCCCGCTGAAACGGCTCCAACTCCTTTAAGCTTGAGGAACCTTTCTGAACCGCAGAGTATTCAGCCATCTTCCCCAAACAGCAGCACTGAGGACTGAACCACAGCCGGTTTATACAGAGATCACCAACTTCCGCCTGTTATAACAGTACTTTACTGCTGACCCCTAGAAGGAGCCCACGAGGGAGACCTCAATGAATGGGTTTGAATAGAGCTAAAC
>TU57219
TGTAAACACTAAACTGCAAAATACAGAACAGAATCCACACTTTTAATTGGATTTATGACTGAAGCAGCAtcatattgataaaaaaaaaatcaaatgtattcTGAAAAAGAACATAAACTGTACTCTGTGTGGTACTACAGTTTATTAGTCTGCaagtataaatattacattttacatccaAAAACTCTAATAGCAATTGTAAAGTGAAAAATGTACAATGAATCAGGCATTTTTAGAGAAACTTAGAAAACAATAATCATAACACTCCTTCCAAACTTCTTCCCAAATTCAAATCAGAAACTGATCACGATGGATGCCCTTCTACCAAGTTAAAGCAGAGAGTACAACAAATGGTACATGGTGATACATGAAACATGGTGTATATGAGCATCGGCAGACATGTGGCAAAGTCAATAAACACTTCACagatgtgggggggggTTGTTTAATATGAG

Function

symbol description
fam32a Predicted to act upstream of or within apoptotic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human FAM32A (family with sequence similarity 32 member A).

NR:

description
PREDICTED: protein FAM32A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57216 True 906 lncRNA 0.41 4 14303541 14306087
TU57219 False 455 lncRNA 0.33 2 14303418 14306941

Neighbor

gene id symbol gene type direction distance location
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 304993 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 318937 13981191 ~ 13984481 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 412286 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 498312 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 509699 13710046 ~ 13793719 (+)
LOC103040508 LOC108414270 coding downstream 5557 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 27154 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 52268 14359209 ~ 14412035 (+)
bsg NA coding downstream 155709 14462650 ~ 14480454 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding downstream 177000 14483941 ~ 14534170 (+)
G42469 NA non-coding upstream 142707 14160405 ~ 14160711 (+)
G42446 NA non-coding upstream 157061 14086909 ~ 14146357 (+)
G42442 NA non-coding upstream 230082 14056598 ~ 14073336 (+)
G42386 NA non-coding upstream 278022 14021643 ~ 14025396 (+)
G42389 NA non-coding upstream 300721 13998920 ~ 14002697 (+)
G42527 NA non-coding downstream 70537 14377478 ~ 14378030 (+)
G42521 NA non-coding downstream 105348 14412289 ~ 14413746 (+)
LOC111192557 NA non-coding downstream 231380 14538321 ~ 14560369 (+)
G42564 NA non-coding downstream 320916 14627857 ~ 14669283 (+)
G42571 LOC103031381 non-coding downstream 378358 14685299 ~ 14688753 (+)
eps15l1 eps15l1 other upstream 168872 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 446057 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 681376 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 781161 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 852941 13448592 ~ 13450477 (+)
G42605 NA other downstream 588121 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1671545 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2133990 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2509660 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2641439 16948380 ~ 16950360 (+)

Expression


Co-expression Network