G42521


Basic Information

Item Value
gene id G42521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14412289 ~ 14413746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57259
TCCCATCTGCATACAGTGCTAAAGATCTCTCCTCTGTACCTAAGTTAAGATCTAGTACCATCACATAATGAACTGACTGGTCACTGACACTGCTGCAGCGTACAATACATACTGGAACTGACTCCTCCTTTATCTCAGCTACAGGGACCAGTTATTAACCATGAAGTAAAAACACATTTGGGTCATGTTTAGTGCTGGTTGAGTTGTTCCTGTCTGTCACAGTCTGTCATATTATTCTtatctaaactctaaactgaTGACAAGTGTGTGAACAGACAGCAGTTCAATCAGAGGTGTTACAACAGTTAACAAGAAACATATTCAGTGCTGacctgaaagaaagaaagaaagaaagaaagaatgaaaggcTGTGGCAATTTTGAGTCTCCAGTGATCTTGGaaagtataatgttatattaagtaattaaaatTCGGATGGTTAATCGTTTACCCTGCTTACAGTCAAAACCTTcattatgtatataaaaaacacaacacaatctTACACAAAATTCAACAATTTGACCAACGACCAATTCTGAACCAGCTAGTCACTCCCACATCAAACTCAGAGTGCCATACTTTACTCCAACAGATTTACAGCACTGTGCAGAATCTTCCAGACCTAATTAGACATAGTGAGATCAGCTCTAATAGACTGTAGATTGAGTTTGACTGGACGTTCTTAGTAGGTGGCCTTCGGCAGCAAGAGTCAGGAACTGGGGTTGTATTGTTATGTATGTTGCGGTAAATACTGTATGGTTGAGTTTGGGTCAGATAGTGTAAACAGCcaaatgactgactgactgaatacaTAGTTTCAACCCCGACCCAATTGTTTCTACTGGCTTTAAAGTTCTATAGTAGTTCTGTGAATGAAGGTGATTAGTACTGACTAATTTAAAGTCATTGTGTAGAACAGGTTTGGATATGTAAACTGttttgaattataaatatatgcTATTATCTTATCCAATCTTATAGACTGAACAGAAGTGACCTGTTGACCTTCTCATGCTCTGACACCCACTGCATCTCCAGCACAGTACCTTAGTATCTCCATTCTACCTATTTACATTAACTTATTATCTTTTTACTGTACACTGATTCCAGGAAATATTCTGCTATTTTTGAGATACAAGCCTTTTGcatgacagcaatgatattataTACCCATTATCCTAAAATGGTAGTGCTTGTATAAAAAAGGCTACCTGATACATTAAATAACCTCGTACTTAATCAGTATTCATACAGTACACTAAGTATTAATACATTACAAATGCAGCTTTTTGCAAGaacgaataaaaaataaataacatcgataaaaataattgtttaagtGCTTTATCAGGATGGGTTGAATTTTATCTGTAGATAGGAACTTCTGTGTCCTCAATGGATCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57259 True 1408 lncRNA 0.36 2 14412289 14413746

Neighbor

gene id symbol gene type direction distance location
LOC103041829 NA coding upstream 254 14359209 ~ 14412035 (+)
LOC103042131 LOC108424984 coding upstream 67109 14334095 ~ 14345180 (+)
LOC103040508 LOC108414270 coding upstream 79250 14312498 ~ 14333039 (+)
mrpl54 mrpl54,LOC102788358 coding upstream 102658 14306723 ~ 14309631 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 413864 13989840 ~ 13998425 (+)
bsg NA coding downstream 48904 14462650 ~ 14480454 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding downstream 70195 14483941 ~ 14534170 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding downstream 208432 14622178 ~ 14660025 (+)
LOC103026778 NA coding downstream 297628 14711374 ~ 14725957 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 420478 14834224 ~ 14868739 (+)
G42527 NA non-coding upstream 34259 14377478 ~ 14378030 (+)
G42496 fam32a,LOC107757479 non-coding upstream 105348 14303418 ~ 14306941 (+)
G42469 NA non-coding upstream 251578 14160405 ~ 14160711 (+)
G42446 NA non-coding upstream 265932 14086909 ~ 14146357 (+)
G42442 NA non-coding upstream 338953 14056598 ~ 14073336 (+)
LOC111192557 NA non-coding downstream 124575 14538321 ~ 14560369 (+)
G42564 NA non-coding downstream 214111 14627857 ~ 14669283 (+)
G42571 LOC103031381 non-coding downstream 271553 14685299 ~ 14688753 (+)
G42583 NA non-coding downstream 314714 14728460 ~ 14733285 (+)
G42579 NA non-coding downstream 327528 14741274 ~ 14749183 (+)
eps15l1 eps15l1 other upstream 277743 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 554928 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 790247 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 890032 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 961812 13448592 ~ 13450477 (+)
G42605 NA other downstream 481316 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1564740 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2027185 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2402855 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2534634 16948380 ~ 16950360 (+)

Expression


Co-expression Network