G42564


Basic Information

Item Value
gene id G42564
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14627857 ~ 14669283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57314
attaactgtggacgcaagaggaagccaagaaagcccagTACATCAACATGGACCCATTCCTGACACAGAAGCTACATTATGGGTAGTTTGTGCAGAGTGTAAAACTTTGGGCCCTGATATTCTATCAATCAGTGTGGAGATGAATCGGAGAATAGAGCAGCTGATCATCAAAAGTTTGCATGGAGCAATGATAATAAACATGATTCAGAtatatttccaaatgtttgttccttatttattatctatgtaGTACTATCAATACAATATAAGAGGATATGCAGGAAGCATTCAGTGGTAGGTTTAACAGCAGGTGCgtttaaagcagcagctttgggctgtgaagcagtaaaatatggtctgtACAATGATGGTGCAGAATTGAGGTGTGTGATCTTTAGCTTGgttagtgtttgtgagagtggaagtagaagtgtttgagtttgtttatgtgtacTTGTATGGGTGAAgttgtgtgcgtttgtgtgtgtgcatgagacaTAGTGTGTGTCTAGTGGTAAACTAGGTGTTTGTAAAAGCTAATTTGGCTATAAGAGATTAGTTATAGCCATGGGGAAGCAG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU57314 True 579 lncRNA 0.39 2 14627857 14669283

Neighbor

gene id symbol gene type direction distance location
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 93687 14483941 ~ 14534170 (+)
bsg NA coding upstream 147403 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 215822 14359209 ~ 14412035 (+)
LOC103042131 LOC108424984 coding upstream 282677 14334095 ~ 14345180 (+)
LOC103040508 LOC108414270 coding upstream 294818 14312498 ~ 14333039 (+)
LOC103026778 NA coding downstream 42091 14711374 ~ 14725957 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 164941 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 302978 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 375991 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 393344 15062627 ~ 15089931 (+)
LOC111192557 NA non-coding upstream 67488 14538321 ~ 14560369 (+)
G42521 NA non-coding upstream 214111 14412289 ~ 14413746 (+)
G42527 NA non-coding upstream 249827 14377478 ~ 14378030 (+)
G42496 fam32a,LOC107757479 non-coding upstream 320916 14303418 ~ 14306941 (+)
G42469 NA non-coding upstream 467146 14160405 ~ 14160711 (+)
G42571 LOC103031381 non-coding downstream 16016 14685299 ~ 14688753 (+)
G42583 NA non-coding downstream 59177 14728460 ~ 14733285 (+)
G42579 NA non-coding downstream 71991 14741274 ~ 14749183 (+)
G42590 NA non-coding downstream 96423 14765706 ~ 14768714 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding downstream 201073 14870356 ~ 14877360 (+)
eps15l1 eps15l1 other upstream 493311 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 770496 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1005815 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1105600 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1177380 13448592 ~ 13450477 (+)
G42605 NA other downstream 225779 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1309203 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1771648 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2147318 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2279097 16948380 ~ 16950360 (+)

Expression


Co-expression Network