G42579


Basic Information

Item Value
gene id G42579
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14741274 ~ 14749183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57342
aagacaaaagcaaaagacaaaaacaaaggaCTCTACACTAACAAATTTTAGCCCTTTCAACCAGCACTCACATTTAACCAAATAATCCTGTCTGCCCCTTCCTCAACTGGGCCATACCATTACTACAGGgtgtaaggagtaaggagtcCCCCCCCATCTTGTAGCACATCCGGAGCTCCCAGGATACTACAAGAAGGGGAGTTAACATGGCCGCCATTCCCCAGGAAGCCCCCCAAGGACAACAACAAGgattttacagcTCACCTTTTCCCACCCAATGATGCACTGGAATGAACCCACATGAGAATGAGAATAATGCCACCTAGTGGCTAAACAGCGCACATGCATATAAAGTGGAGACAACTTTCCCGTCCACCAGCTCCTCCACAATGACCTTCACTCGCCTCTGAACAAGCCTCCTGTACTCAGCGATCTCCAGCTCCAGCCTCATCTTGATGTCCAGCAGCAGCTCGTACTCGGTGGCCTGCTGCTGTATGTTGACGTTGATCTGCCGGAGTTCCTCCTGCAGGCGGTCTATGTGTGTCTGCAGCTGAGTCAGCTGGACGCTGTAGCGCATCCCCACATCAGCCACGTTCTTCTCCAGGACTTGTTTCTGTACCATAAATGGAGAGGTGAGGAAAGGGTTAATACACAGTAATTAAATCATTGTTCGTATAAATGTACAGTCATCCAAATCAGAGTTTTGagttctttataaaaaaaaaactgaggctGTAGGAGAACTGAAACCACAGTCCATGTTTCTGAACCCTGATCCTGGAGGCCCACCCCCAGCAATCGTATTAGTTTCCCTGATCCCAGCACTAACTGAATTTATTGTCTGattaacagtttattattatatatattagttaaaaAGGGTAACACATATTTATAGGGGGAGTGGGGGGTATTTATATAGGTTCTCTGTTGCATGCAAATCATTCACAATGTCctggaaaacagaaaacagtcaTGGATGCTTATACAATTTTTGGGAACAATCAGTGATGACAGAGCGTGTGAATGAGTGACATATGCAGCAATACTGTGACACACAGAGATCATCCTGATTGGTCTGTATGGCTGTTTAGACCCGTCAGTGTGCTCTGTAGGCAGAATTTACATCCTGACTGGTCTGTCTTTGTGTTCACAAGACCCATAATTGTCCTTGGTGGACGGGCTTTTTACTCAATATATAGGTCTCTCTTCCTATGTCAGGGTATCTTTTTAGTGTAGCTCTGCAGCTCCATGGCAGAAAGTGGACCTTGAGGACCGGAGttcagaaacactgctgtagtccactgtagggctgcaacgattaatcTGACAATTGTTTTTCGATTAGATGATTAATCGCCATTGTTTTTATCATGCCCACCATTTGTGTTTCCTACTGGTGAGGCTTTCGATCCAGCGCTTGACTTACtgaaaacttaattttttttttaataatgaaaattgCCATTAAGTctgtattattgtttattatttatttattagtatttacttCTTTCA

Function

GO:

id name namespace
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
TU57342 True 1518 lncRNA 0.43 5 14741274 14749183

Neighbor

gene id symbol gene type direction distance location
LOC103026778 NA coding upstream 15317 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 81249 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 207104 14483941 ~ 14534170 (+)
bsg NA coding upstream 260820 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 329239 14359209 ~ 14412035 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 85041 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 223078 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 296091 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 313444 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 342188 15091371 ~ 15097213 (+)
G42583 NA non-coding upstream 7989 14728460 ~ 14733285 (+)
G42571 LOC103031381 non-coding upstream 52521 14685299 ~ 14688753 (+)
G42564 NA non-coding upstream 71991 14627857 ~ 14669283 (+)
LOC111192557 NA non-coding upstream 180905 14538321 ~ 14560369 (+)
G42521 NA non-coding upstream 327528 14412289 ~ 14413746 (+)
G42590 NA non-coding downstream 16523 14765706 ~ 14768714 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding downstream 121173 14870356 ~ 14877360 (+)
G42600 NA non-coding downstream 129836 14879019 ~ 14881077 (+)
G42604 NA non-coding downstream 141758 14890941 ~ 14903934 (+)
G42626 NA non-coding downstream 216967 14966150 ~ 14966870 (+)
eps15l1 eps15l1 other upstream 606728 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 883913 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1119232 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1219017 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1290797 13448592 ~ 13450477 (+)
G42605 NA other downstream 145879 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1229303 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1691748 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2067418 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2199197 16948380 ~ 16950360 (+)

Expression


Co-expression Network