G42583


Basic Information

Item Value
gene id G42583
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14728460 ~ 14733285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57352
GTTGGAGACAAAAATGAAGCGTAAATCATTTTGCatgaactgttttatttattttcttgttcaGTTGCCTGAAGTGACAGTTGTGGATCGTTTCATGATCTTTAATGGCGTCAGCCTGGGTTTACTcagtggtggaggaggaggacacCACCTTCCCATCAACCACCTCCTCCACAATGGTCTTCACCTTCACAGTACGAGTGGGGCCAGTACTGGTACTGCTGGCATTGCTGACATTGCTGACACTGCTCACGCTGCTGACACTGCTCAAACTGACTCCTCCACCAC
>TU57357
GTTGGAGACAAAAATGAAGCGTAAATCATTTTGCatgaactgttttatttattttcttgttcaGTTGCCTGAAGTGACAGTTGTGGATCGTTTCATGATCTTTAATGGCGTCAGCCTGGGTTTACTcagtggtggaggaggaggacacCACCTTCCCATCAACCACCTCCTCCACAATGGTCTTCACCTTCACAGTACGAGTGGGGCCAGTACTGGTACTGCTGGCATTGCTGACACTGCTCACGCTGCTGACACTGCTCAAACTGACTCCTCCACCACTGTGAAATACACAACAATATAAAAAGGGTGTGgtaatttaaacatttctataGTTCTAGAACAATCTATGTACCGATCTATAGTACAGAACAATCTGAAGAAATGCCCCTTACCCGCCGCCAATTTCTCCATCAAGCAGCCTCCGGTACTCAGCAATCTCCATCTCAAGGCGGGTCTTGATGTCCAGCAGCATTCGGTACTCAGCAATCTCCATCTCGAGGCGGGTCTTGATGTCCAGCAGCATTCTGTATTCCTGGTCTTTCCGCTCTATTTCAGCTTTGATGTCCTGCAGCTGCCGTTCTATCCCTGTGATGTTGACCTGCATCGTACCTAGTTTCACTGAGTAGCGTAATTCTGTTTCTGATAGAGTACCCTCCAGAGCATCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57352 False 288 lncRNA 0.48 2 14728460 14732951
TU57357 True 668 lncRNA 0.47 2 14728460 14733285

Neighbor

gene id symbol gene type direction distance location
LOC103026778 NA coding upstream 2503 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 68435 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 194290 14483941 ~ 14534170 (+)
bsg NA coding upstream 248006 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 316425 14359209 ~ 14412035 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 100939 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 238976 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 311989 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 329342 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 358086 15091371 ~ 15097213 (+)
G42571 LOC103031381 non-coding upstream 39707 14685299 ~ 14688753 (+)
G42564 NA non-coding upstream 59177 14627857 ~ 14669283 (+)
LOC111192557 NA non-coding upstream 168091 14538321 ~ 14560369 (+)
G42521 NA non-coding upstream 314714 14412289 ~ 14413746 (+)
G42527 NA non-coding upstream 350430 14377478 ~ 14378030 (+)
G42579 NA non-coding downstream 7989 14741274 ~ 14749183 (+)
G42590 NA non-coding downstream 32421 14765706 ~ 14768714 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding downstream 137071 14870356 ~ 14877360 (+)
G42600 NA non-coding downstream 145734 14879019 ~ 14881077 (+)
G42604 NA non-coding downstream 157656 14890941 ~ 14903934 (+)
eps15l1 eps15l1 other upstream 593914 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 871099 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1106418 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1206203 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1277983 13448592 ~ 13450477 (+)
G42605 NA other downstream 161777 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1245201 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1707646 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2083316 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2215095 16948380 ~ 16950360 (+)

Expression


Co-expression Network