G42599 (cdc6,LOC107753851,LOC107718871,LOC102777898)


Basic Information

Item Value
gene id G42599
gene name cdc6,LOC107753851,LOC107718871,LOC102777898
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14870356 ~ 14877360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57374
TGGAGGTCACCCAGTTTTATTTACATcgaatgttaaaataaaatgcaaaacaatTGTTGAAACTGTTACACAAAAATGACGTGACTTCAttaaaacatactgtacatttaatataaaacactaaatgtacaattaaaagaaaaaaataaaggaaaaacacCTTTCATAAGGTTATGGGCTGTAGAAACAATTCATTAAaagaaaatttacaaaaataaatatctgaaaTGAGGTCATCACATGGTGAGGGAAATCAGAGCTTTAAAACTTTAAGGAAGGCCTGCAGCCAAGATGCTGCCCAGCAGTGCACGATCCTTCAGAGCATTCTCCACATCCTTTTCTTCAATCTTCAGACAgatctTTGTGAGTCGTGCTTCCTTGGCCTTCTTCAGAGAAAAGATACCCCTGCTCTCCAGCAGGCTGCACAGAGACAGGCATTCACCTTGTcccactgcactgacctgcctCTGCTTACACAGTTTACTGTAGGCCTCACACAGCTTGCCTAACTGGACCTCTCTACTCTTGCCGTTGCGTGTGAGCAGCAGCAGGCAACAGACCAGGAGCTTCTGCTGTAGAGGGAAGCTTTCTCCATCTCCTCCTGCACTACTTGTCATCCTGTCTCCATACACCTCAGACAGGACCTTAGCCACCTGAGGAACACTCACGCGTGATGCTTTAGCATTTGCTGCGGGTTCTGATGCCTCTTTGGATTTGTTTTTGGACTCAACCATCTCAACGGCTCTCctgcAGATGTCCAGTGCTTTGCGAGCATCTCCTGACACGGCTGACACCTTCCTGGCACAAAACTGGATAGCAGCACCATCCAAAACACCCTCTCCTGATAcCTGTGCAAGCCTGTCTTGGACGATGGCAGTTAGCTCTTGGCGGCTGTATGGTGGGAAATGGAGGAGCTGTGGTCTGCAGTGAGGCTTTGTCTGCAACCTGGGCAGAATACGGTCTGTAAGATCCAGCGCATTGGCAATACCTATGAGGCACAGGCGGGACTTTGAAAGATAAGGCCATTCAAAGATGGTGTAGAGAACATCCTGGGACTTGCTGTCCAGCTGATCCATTTCATCCAGAACCAACAGCACAGTGGGCCCTGAACTGGTCAacagtttctccagtttaccACCACTGGAGCTTTTAGAGGTCTTCAACTTCTCAGCCAACAGAGGAAAGATCGAATGGGAGCTACGCAAGGTCATACAGTTAATTACCACAGTCTGCACTCCCTTCAGCAGAGCCTTCTGTTCCTGAAGCACACAGTTAAGGCAGGCTGTCTTCCCCGTCCCTGGTGCTCCAGAGATGTACAGGCTGGAGGGCTTGCCAGGCACCACATGGTTCTCCAGGAACGAAACAATGGTAGCTCGCTCTGCTTCACGAGAGAGCAGTCGTTCAGGCACAGCTGTGTGCAGAGACTGCTTCACACTCTGGTAGTGTGACTTTTGTTCAGCAAAAAGCTGAGAGACTGCAGCTTTAGCTGGTGACCCTAAATCAGCACAGACGGTCTGCAAACGTTTGGGAGAAGCAGCAGAAAGACGCGAGAGGGGGATTTTAGAAGGTGACTGGGTAGAACGAGGAGGAGAGCCGAAGACTGGAGCATTCTCATTGAAGGAAAGTTTGCGGGGGCTCAGGGGAAGTCTCTCAGCCAAAGAGCTGGTTTTGAGCACTGGGTTTCTGGGTGAGAGGGGGAAGGTTTGGACATCAGCACTGGTCTTTCTGGGAGAGAGAGCGATGGTATGGAGGTCTGCCAGGTTTGTCTTTCTGGGAGAAAGTGGGATTGTTCGGACATCCACCAAGTGTGGCTTTCTGGGAGACAAAGGAAGGTCTCGAACTGCATTCTCAGTATCAGGCAGAGACGAACGCTTGGAGCTGGACTTTTGGATTACCCTGGAAGACTTGCGTTTGGGGAACTGGAGGGTTGGCTGACTCTGGGAACGAGTGCTAGGCATTTTCGTAACAGGACCAGTTTGCAGCTctgtataaaatgtttaataatcttCTGTTTTTCCTCAGGAAGTCTCTCACCCGCAGCTCCACTGTCAGCAGTCTCTCCTCTGGCGCGCTTCAGCTAATCGGGGTCTTTTAGGATCAGCTGGAACCTCCCGCCACC
>TU57379
TGGAGGTCACCCAGTTTTATTTACATcgaatgttaaaataaaatgcaaaacaatTGTTGAAACTGTTACACAAAAATGACGTGACTTCAttaaaacatactgtacatttaatataaaacactaaatgtacaattaaaagaaaaaaataaaggaaaaacacCTTTCATAAGGTTATGGGCTGTAGAAACAATTCATTAAaagaaaatttacaaaaataaatatctgaaaTGAGGTCATCACATGGTGAGGGAAATCAGAGCTTTAAAACTTTAAGGAAGGCCTGCAGCCAAGATGCTGCCCAGCAGTGCACGATCCTTCAGAGCATTCTCCACATCCTTTTCTTCAATCTTCAGACAgatctTTGTGAGTCGTGCTTCCTTGGCCTTCTTCAGAGAAAAGATACCCCTGCTCTCCAGCAGGCTGCACAGAGACAGGCATTCACCTTGTcccactgcactgacctgcctCTGCTTACACAGTTTACTGTAGGCCTCACACAGCTTGCCTAACTGGACCTCTCTACTCTTGCCGTTGCGTGTGAGCAGCAGCAGGCAACAGACCAGGAGCTTCTGCTGTAGAGGGAAGCTTTCTCCATCTCCTCCTGCACTACTTGTCATCCTGTCTCCATACACCTCAGACAGGACCTTAGCCACCTGAGGAACACTCACGCGTGATGCTTTAGCATTTGCTGCGGGTTCTGATGCCTCTTTGGATTTGTTTTTGGACTCAACCATCTCAACGGCTCTCctgcAGATGTCCAGTGCTTTGCGAGCATCTCCTGACACGGCTGACACCTTCCTGGCACAAAACTGGATAGCAGCACCATCCAAAACACCCTCTCCTGATAcCTGTGCAAGCCTGTCTTGGACGATGGCAGTTAGCTCTTGGCGGCTGTATGGTGGGAAATGGAGGAGCTGTGGTCTGCAGTGAGGCTTTGTCTGCAACCTGGGCAGAATACGGTCTGTAAGATCCAGCGCATTGGCAATACCTATGAGGCACAGGCGGGACTTTGAAAGATAAGGCCATTCAAAGATGGTGTAGAGAACATCCTGGGACTTGCTGTCCAGCTGATCCATTTCATCCAGAACCAACAGCACAGTGGGCCCTGAACTGGTCAacagtttctccagtttaccACCACTGGAGCTTTTAGAGGTCTTCAACTTCTCAGCCAACAGAGGAAAGATCGAATGGGAGCTACGCAAGGTCATACAGTTAATTACCACAGTCTGCACTCCCTTCAGCAGAGCCTTCTGTTCCTGAAGCACACAGTTAAGGCAGGCTGTCTTCCCCGTCCCTGGTGCTCCAGAGATGTACAGGCTGGAGGGCTTGCCAGGCACCACATGGTTCTCCAGGAACGAAACAATGGTAGCTCGCTCTGCTTCACGAGAGAGCAGTCGTTCAGGCACAGCTGTGTGCAGAGACTGCTTCACACTCTGGTAGTGTGACTCT
>TU57380
TGGAGGTCACCCAGTTTTATTTACATcgaatgttaaaataaaatgcaaaacaatTGTTGAAACTGTTACACAAAAATGACGTGACTTCAttaaaacatactgtacatttaatataaaacactaaatgtacaattaaaagaaaaaaataaaggaaaaacacCTTTCATAAGGTTATGGGCTGTAGAAACAATTCATTAAaagaaaatttacaaaaataaatatctgaaaTGAGGTCATCACATGGTGAGGGAAATCAGAGCTTTAAAACTTTAAGGAAGGCCTGCAGCCAAGATGCTGCCCAGCAGTGCACGATCCTTCAGAGCATTCTCCACATCCTTTTCTTCAATCTTCAGACAgatctTTGTGAGTCGTGCTTCCTTGGCCTTCTTCAGAGAAAAGATACCCCTGCTCTCCAGCAGGCTGCACAGAGACAGGCATTCACCTTGTcccactgcactgacctgcctCTGCTTACACAGTTTACTGTAGGCCTCACACAGCTTGCCTAACTGGACCTCTCTACTCTTGCCGTTGCGTGTGAGCAGCAGCAGGCAACAGACCAGGAGCTTCTGCTGTAGAGGGAAGCTTTCTCCATCTCCTCCTGCACTACTTGTCATCCTGTCTCCATACACCTCAGACAGGACCTTAGCCACCTGAGGAACACTCACGCGTGATGCTTTAGCATTTGCTGCGGGTTCTGATGCCTCTTTGGATTTGTTTTTGGACTCAACCATCTCAACGGCTCTCctgcAGATGTCCAGTGCTTTGCGAGCATCTCCTGACACGGCTGACACCTTCCTGGCACAAAACTGGATAGCAGCACCATCCAAAACACCCTCTCCTGATAcCTGTGCAAGCCTGTCTTGGACGATGGCAGTTAGCTCTTGGCGGCTGTATGGTGGGAAATGGAGGAGCTGTGGTCTGCAGTGAGGCTTTGTCTGCAACCTGGGCAGAATACGGTCTGTAAGATCCAGCGCATTGGCAATACCTATGAGGCACAGGCGGGACTTTGAAAGATAAGGCCATTCAAAGATGGTGTAGAGAACATCCTGGGACTTGCTGTCCAGCTGATCCATTTCATCCAGAACCAACAGCACAGTGGGCCCTGAACTGGTCAacagtttctccagtttaccACCACTGGAGCTTTTAGAGGTCTTCAACTTCTCAGCCAACAGAGGAAAGATCGAATGGGAGCTACGCAAGGTCATACAGTTAATTACCACAGTCTGCACTCCCTTCAGCAGAGCCTTCTGTTCCTGAAGCACACAGTTAAGGCAGGCTGTCTTCCCCGTCCCTGGTGCTCCAGAGATGTACAGGCTGGAGGGCTTGCCAGGCACCACATGGTTCTCCAGGAACGAAACAATGGTAGCTCGCTCTGCTTCACGAGAGAGCAGTCGTTCAGGCACAGCTGTGTGCAGAGACTGCTTCACACTCTGGTAGTGTGACTTTTGTTCAGCAAAAAGCTGAGAGACTGCAGCTTTAGCTGGTGACCCTAAATCAGCACAGACGGTCTGCAAACGTTTGGGAGAAGCAGCAGAAAGACGCGAGAGGGGGATTTTAGAAGGTGACTGGGTAGAACGAGGAGGAGAGCCGAAGACTGGAGCATTCTCATTGAAGGAAAGTTTGCGGGGGCTCAGGGGAAGTCTCTCAGCCAAAGAGCTGGTTTTGAGCACTGGGTTTCTGGGTGAGAGGGGGAAGGTTTGGACATCAGCACTGGTCTTTCTGGGAGAGAGAGCGATGGTATGGAGGTCTGCCAGGTTTGTCTTTCTGGGAGAAAGTGGGATTGTTCGGACATCCACCAAGTGTGGCTTTCTGGGAGACAAAGGAAGGTCTCGAACTGCATTCTCAGTATCAGGCAGAGACGAACGCTTGGAGCTGGACTTTTGGATTACCCTGGAAGACTTGCGTTTGGGGAACTGGAGGGTTGGCTGACTCTGGGAACGAGTGCTAGGCATTTTCGTAACAGGACCAGTTTGCAGCTctgtataaaatgtttaataatcttCTGTTTTTCCTCAGGAAGTCTCTCACCCGCAGCTCCACTGTCAGCAGTCTCTCCTCTGGCGCGCTTCAGCTAATCGGGGTCTTTTAGGATCAGCTGGAACCTCCCGCCACCCTATGACAGCGTCTACGCACTGCAACCCTATTGGTTGGCTTAGTGCCAAAGCCCGCGAACAGCCAATCAAATCGCTCAATC

Function

symbol description
cdc6 Predicted to enable DNA replication origin binding activity. Acts upstream of or within mitotic cell cycle phase transition. Predicted to be active in nucleus. Is expressed in central nervous system and proliferative region. Used to study Meier-Gorlin syndrome. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 5. Orthologous to human CDC6 (cell division cycle 6).

NR:

description
PREDICTED: cell division control protein 6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57374 False 2119 lncRNA 0.49 12 14870356 14876200
TU57379 False 1452 lncRNA 0.48 9 14870356 14874073
TU57380 True 2200 lncRNA 0.49 12 14870356 14877360

Neighbor

gene id symbol gene type direction distance location
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 1617 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 144399 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 210331 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 336186 14483941 ~ 14534170 (+)
bsg NA coding upstream 389902 14462650 ~ 14480454 (+)
LOC103022023 NA coding downstream 94901 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 167914 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 185267 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 214011 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 253617 15130977 ~ 15136409 (+)
G42590 NA non-coding upstream 101642 14765706 ~ 14768714 (+)
G42579 NA non-coding upstream 121173 14741274 ~ 14749183 (+)
G42583 NA non-coding upstream 137071 14728460 ~ 14733285 (+)
G42571 LOC103031381 non-coding upstream 181603 14685299 ~ 14688753 (+)
G42564 NA non-coding upstream 201073 14627857 ~ 14669283 (+)
G42600 NA non-coding downstream 1659 14879019 ~ 14881077 (+)
G42604 NA non-coding downstream 13581 14890941 ~ 14903934 (+)
G42626 NA non-coding downstream 88790 14966150 ~ 14966870 (+)
G42632 NA non-coding downstream 123075 15000435 ~ 15002096 (+)
G42633 NA non-coding downstream 133120 15010480 ~ 15010974 (+)
eps15l1 eps15l1 other upstream 735810 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1012995 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1248314 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1348099 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1419879 13448592 ~ 13450477 (+)
G42605 NA other downstream 17702 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1101126 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1563571 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1939241 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2071020 16948380 ~ 16950360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003963 cdc6 coding NC_007122.7 CM002895.2 11781973 ~ 11792766 (-)