G42600



Basic Information


Item Value
gene id G42600
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14879019 ~ 14881077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU57381
CCATaacctttattttcaaattCAACACAATAGCCAGTCTACTGTTACAAACTGCTCATTTTGGCAGCTTAGAACTGTTTACCAAAGTCACATAAAATTGCAACAGGCCAAGAAGGAGACAAAAGAGGTTCTTGCAACAGTCCAAGAAGAAAACCCACCTCTGGCCACTTAGAGGCTACATACGGATAAACGCTCTCCGGAAAAAGACCAGATAGGAAATGGTCTCCTCATAATAAACGTTTTACTGTTATAGAGGTTTAATTCTCTGTATTACAAAACTTtacaataaaaatctttaactacattttatatagtgtaatatacattattacaattcattttcttaattattacactagtgttttatttaacaaaaagaaaaggaaaaaaagaaagaaaaaaaaacattggtacCAGTTAAATCTGTGAATGACATCTTTCTTCCAGAGaaattcataaggttttaattaataataaaggaATATGATGCTGATTTTACAGCACATGTTGCACCATGAGCAGACCCTCAAAAATGTCAGGGCCTACTGCATACACTGTGTGCTGAGTGGCACTTAGGATATTTGGTCAGTACTAAAGAAGAGTGGTTAGGAATCAGGTAAGTTTAACACATACAAATCAAGGTATCAGATTTCCCTTCTTTACAGACAAAATTCAAATGCATTGCAACGTATTTGCCGCTCACAGCAGGAAAGGCAAAGGAATGGCTGCTCCACGTTCCTGTACTAAACAACACTCAGATTGTTCAGAGATGAAATCCAAATGGAATGAACGATTCTATCAAAAGACACAGggctaaaaataaacaataacattTACTATATAGCCCCTACTATTGGcaaaataatcacaaaaaataaaatcacacaatCTTCCCTAATATACTTGACACATTAGCTCTCATTTGGGAGGAACAGTCTATGATACAGTAACAAAGAATTACTTTATGATTCTAAGGcgcaaaaacatgaaacaaaacaaacaaaaaaaaaactttccgcATAATGTAATGATTGtctacttaattaattaattaattattttttcttttcactctGATAGAGATAGATTGGCATAAAACAAGTGCTTGGTCCATTAGTTGATGCCCATCTCTGGCAAAGATTGTGCAGCTGTCACATTAGAAGGAATGCATATATAGAGAATAGTTCTCTTGGGTCATCTAGAGGCACAATACAATATAGGCTTCACGCTTTATCAAACTGCATAGTGTTTTATGGTCTGGAGGTATTTGTTAGGAACCAGTCGGAGCAGAAACAGGGTTGATTTCTCAGACGTGATTCAGCAATGAGAATTCACCAAATTTGTTTCATCAGTGAAAAATAATCTTGCTTAGTGTATTGTGGTCTTAGCTTATTCTGGAAAAGCAACCCATGTTGTGGTCACGGGATCATAAGTAATCTAGTTTCCCTATTTGGTCTATTTGGTCAGATATAAATGTTGGGCACCCctggcatttttttaaatgcatagttaatattaaattacattactatTGCCATTATATaagtttattttgttatttgtattatattattattatttattactataaCAAATATGATGTGTAAGACCTATTAATTTTCTTCATctgattataaattaattattcagaTCAAGACAGATATTTTTGTTGAGGTAAACTGCAGTGTGCATTCTCTCAAAACAATGTGCTATATAAGAACACACTTCtgttttatgtctattttaccACATATTGTGTAGGGCACACGCTTAGTGTGAACTGTGTTATTTGAACACATCTGAATGCACAGCTAGTGTTAAATCGTTAAGTCTTTATCTGGATACACAGGTGTGTTCAAACAGTAGCATGCCatgtgttgtttttaacacatttattttgagAGTGTACAGGTAGGTGTATTAGTGTGCTGATGTGAATGTGTGGAGTTGGGTTCAAATTTCATAGTCGTTCCTCACTTCCTGAGTGTATTTCACCTTGCAACAGGTGGCAGTGGAGGAGCTCCTCTCATCAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU57381 True 2033 lncRNA 0.34 2 14879019 14881077
Loading

Neighbor


gene id symbol gene type direction distance location
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 10280 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 153062 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 218994 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 344849 14483941 ~ 14534170 (+)
bsg NA coding upstream 398565 14462650 ~ 14480454 (+)
LOC103022023 NA coding downstream 91184 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 164197 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 181550 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 210294 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 249900 15130977 ~ 15136409 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding upstream 1659 14870356 ~ 14877360 (+)
G42590 NA non-coding upstream 110305 14765706 ~ 14768714 (+)
G42579 NA non-coding upstream 129836 14741274 ~ 14749183 (+)
G42583 NA non-coding upstream 145734 14728460 ~ 14733285 (+)
G42571 LOC103031381 non-coding upstream 190266 14685299 ~ 14688753 (+)
G42604 NA non-coding downstream 9864 14890941 ~ 14903934 (+)
G42626 NA non-coding downstream 85073 14966150 ~ 14966870 (+)
G42632 NA non-coding downstream 119358 15000435 ~ 15002096 (+)
G42633 NA non-coding downstream 129403 15010480 ~ 15010974 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding downstream 133866 15014943 ~ 15019535 (+)
eps15l1 eps15l1 other upstream 744473 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1021658 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1256977 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1356762 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1428542 13448592 ~ 13450477 (+)
G42605 NA other downstream 13985 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1097409 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1559854 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1935524 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2067303 16948380 ~ 16950360 (+)

Expression


G42600 Expression in all Baseline Samples

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G42600 Expression in each Bioproject

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G42600 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 16.
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Co-expression Network