G42604


Basic Information

Item Value
gene id G42604
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14890941 ~ 14903934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57389
GCTACCAAAAGGTTAACTTCAGTGTTTCCAGCAGCATTGGAGTAAATTGGAGCGTTAATCTGTCAGTTACTCCAGCAGAGCCCCTGGACTCACCAACCGACCGACCGGCTCGTAAAGTAAAACTAACTCTAAATAAACTACCCTAGCGTTAACGTAACTAACTAATCCCAAACAGCTTCATGTTTTTAACTCGCCGGCGGGGCACACTAGAGCGGCGAATCTCTGAATTTAACCTGACAAATTGACAGACTTTCTCTCCACCCGAAACACTGTCAAACTGAGAGACGCTCCGCCACAATCCGCGAAAACAACCCCAGCAGCTCTCTAACTTTTCCTCCCAGCccgagaggaggaggaggaggaggagaagggcCACTGCTTCTTCCTTCAGGGCTTCGGAGAACTCCAACTCCAGCACCGAAGGAACCCGGAAACCGAGGAGCCGACACAAAATGGAGGCAGGTGGCCGAAGTTCTCCGACTGAAGCCGAAAAGCTACACTGCACTAGAAGAGAGAACCGTTGAAGAGGAGCACCTTTCTTAGCTAGTGAGGatttaattaacaaaataaacattttgtacATATGTCTgccaacatttatttaataacctCATTAGTTTTGTGTAGGAGTAATATTACTGGATAAACGTTtatgtgtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57389 True 661 lncRNA 0.47 2 14890941 14903934

Neighbor

gene id symbol gene type direction distance location
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 22202 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 164984 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 230916 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 356771 14483941 ~ 14534170 (+)
bsg NA coding upstream 410487 14462650 ~ 14480454 (+)
LOC103022023 NA coding downstream 68327 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 141340 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 158693 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 187437 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 227043 15130977 ~ 15136409 (+)
G42600 NA non-coding upstream 9864 14879019 ~ 14881077 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding upstream 13581 14870356 ~ 14877360 (+)
G42590 NA non-coding upstream 122227 14765706 ~ 14768714 (+)
G42579 NA non-coding upstream 141758 14741274 ~ 14749183 (+)
G42583 NA non-coding upstream 157656 14728460 ~ 14733285 (+)
G42626 NA non-coding downstream 62216 14966150 ~ 14966870 (+)
G42632 NA non-coding downstream 96501 15000435 ~ 15002096 (+)
G42633 NA non-coding downstream 106546 15010480 ~ 15010974 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding downstream 111009 15014943 ~ 15019535 (+)
G42637 txlng non-coding downstream 113866 15017800 ~ 15054880 (+)
eps15l1 eps15l1 other upstream 756395 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1033580 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1268899 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1368684 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1440464 13448592 ~ 13450477 (+)
LOC103036127 cunh19orf24 other downstream 1074552 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1536997 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1912667 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2044446 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 2108533 17012467 ~ 17017856 (+)

Expression


Co-expression Network