G42626


Basic Information

Item Value
gene id G42626
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14966150 ~ 14966870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57428
TCGTCGCCTGGACGTCAGGTGCCTCGGGGCCGCCGTGCCGCGGCGCTTTGTTGTTcgccgctgccgccgccgccgtGGGCGCCCCCCGCGCGCGCTCCACTTTGCTCTTCACGCCGCCGTGAGCCAAGAGCGTCCCGCCGCCCGACGACACGGTGCCGCTCTCGTCGTCCAGGCGGCGGTCGTCCTCGGCCGCGGAGACCAGGCGCATCAAGACGAAATCGGGAGACATATCTCGCGCGTCGTTCATTCTTCGTCCTCGGTGCACCGAACgggagcgagcgagcgagatcAATGCGTTTCACATCGCCCCTCAGTCTCCAGGCATCAGGCTCGGCTAGTGCACCATAATGGAAGCCGTAATAATCCGCTCGCTCGTGGTGTTTTAACCTGCACTGCCCTCCTCCGCCACGACGAATCACAGCACGAGCCGCTCCGGCCGCTCGCTCAGCATCGCACGACCGTCACGGCGGCGCCGGATCTTCCCGCACAACAACGGCATTTACAGGCCGAGCtcgaacaaaaaaacacagcagcggGTCCTCGCAGGGTCATCTGTAACGCTTCAGTGAACGGGCTGCTGCCTGCGCGTCTCCGCTCACATTACCGTCTCTACGGCGCACACACAGGCCCCACCCGCGCCATACGCTGTTTTTTTACCCACCCGTATTCAGACAAGCCCCGAACCCCCCGGCACCGCGATTGGCTCCCTGGCGAGTGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57428 True 721 lncRNA 0.65 1 14966150 14966870

Neighbor

gene id symbol gene type direction distance location
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 97411 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 240193 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 306125 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 431980 14483941 ~ 14534170 (+)
bsg NA coding upstream 485696 14462650 ~ 14480454 (+)
LOC103022023 NA coding downstream 5391 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 78404 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 95757 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 124501 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 164107 15130977 ~ 15136409 (+)
G42604 NA non-coding upstream 62216 14890941 ~ 14903934 (+)
G42600 NA non-coding upstream 85073 14879019 ~ 14881077 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding upstream 88790 14870356 ~ 14877360 (+)
G42590 NA non-coding upstream 197436 14765706 ~ 14768714 (+)
G42579 NA non-coding upstream 216967 14741274 ~ 14749183 (+)
G42632 NA non-coding downstream 33565 15000435 ~ 15002096 (+)
G42633 NA non-coding downstream 43610 15010480 ~ 15010974 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding downstream 48073 15014943 ~ 15019535 (+)
G42637 txlng non-coding downstream 50930 15017800 ~ 15054880 (+)
G42647 txlng,LOC107665847 non-coding downstream 90345 15057215 ~ 15057675 (+)
G42605 NA other upstream 66902 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 831604 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1108789 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1344108 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1443893 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 1011616 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1474061 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1849731 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1981510 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 2045597 17012467 ~ 17017856 (+)

Expression


Co-expression Network