G42756 (LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066)


Basic Information

Item Value
gene id G42756
gene name LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15102476 ~ 15191970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57669
aaaaaaaaaaaaaaaaaaaaaaaaaagaatttggcTGGAAGTCTGAACATAAATTGAATATGCAGGACAGATGGGTGCCAGGTCCAGGAttcagaaacactgctgtaatgtaatgttaaaaatTAGCTTTGTATCTCTCCTGTAGATCTTTGTGAGGGTTCTAGGTGTAGACTCTTTAAACCTAGCCAATGGATTCATTCAGAAATTCTGAGTCGTGTTAAAATCATGTTGCCACCAGCAGCAACTCCTCTGTTGCTTTGTTAGACGAGTAGCATTATCTGTACATGTTTCTGGTGCCATACATAAGCGTTTTTGAAGATTTTGAGGACTTTGGCGCGAGGCTAACATGCATGTTAAACAACACTGAACATTGAAgacaaacaagacaaaaaaaaagaccaaaggATTCAGAAAATCATAAACGAATGATGACTAAAACTTCGCATGACCTAAAACTGGAGTTCTTTTTCTAGGCATTATTTTTGCTGCGTTCATAGTCTTCCATGTACTACTGTGAAGAGGTCATTCTGGGTGTTTTAGGTTGAGCCTGGTTTGTAGATTATACAGGTACCTTCCCCGCTTGTCACTGTACAAATACCATTTACGTCTGCGCTGTACAAACACCCGGCTTGACTCCTACTGTTCTGTGTGAAATGGAGCTGTGGGTGTGGCCTGACCTCTGCCCTACATTCTCCTACACTTGAAAAGAGCAAGTAAAAAGCTGTTGAAATTATGGAGTAGTAAATGATGATCATAATTTTTTCATATGCACTAAACAGATTGGGTTTCTTTCTTTCCCCAGAATGGACCCTCTGACCCTGCCTTCTGGTTTCCTCTTACTTTTTCCACtccgcacacacagacacacagcgtAGGATGCTTTCTGAACAGCCAGCTGCGCGCTAAAGAGTGTCTGTTGCCCCTTTCAGACCAAGGAGAATGGAGGTCTTGTATACATCCTACATGCTTGACATAATTGAGATTGCAGAGATAGCACAAAGCATGCCGTGTAGACACACGCTCCCCGAGACAAAGGGATGTTGCTCAACCAACTGATTAGAAATAAACAGATGAGGCTGCAGCACcggaaccacacacacacacacacacacacacacacacactaaacgaAACCAACCTTCTACAAGGAGTAGGAAGAATTGTGACACCAACGTTATGCTGAGGAACTGTGGAGAAAGCACCTCTTTCAGATGTGAAACTATTATGTAAATTAAAccagggatgcactgaatatttggcaaccaaattTTCTGTGCTGGAATTTGCAAGAAAAAGCAATTTCAGTGTTCAGCCGAAttgcaaaatgtaaaatgaaacaGGCACTTCTTAATCTGATCACTGCAGAACACATTGAACATTCAACACATTGAATAATGAATTGGGTAATCAGTATATATGGCAGTGTTGGTAACTTGGAAAGATCAAGCACATCATGATAAAGAGGTTACGATTCAATATAATCGCACATCAAGATGATTACAagtcaacttttttttactcgTATTTAagtagtataaaaaaaaaaaacatctgaataaaaaataaattaaatgtatgtaaTCAGAACAGCGGGCAGGATTTAAACACAAAGCTAATAGCACTTTTCCACCGACACGAAACCTACACAAGTAcattttccaccaacaaaagtaggttccggaACCACGAATGTTCGTTCGCAGTGGGAACCAAAAAATACTAGGCCGCTGTGCAAagccctctgttgatgacagATGTGACGTTTTGACTTCAAGGAAACTGGTGGCAAAGCGGGCTGGTTCACTGGAATGCACAACGGTTCTTATAACCTGAACGGACTTCTTTTGGTGGGGAAGTACTGTCTGCCAacaaatctttacatgtaaacgattcattaaaaatcagtagtgtgtgtgtgaaaataaccattactaaaaaaaatttattttatttttgctataaacatcttgtttttttgttttgtcagcATCTTGCGGGTGCCCCACCCCCCTTTTTATGCATCTGCAGGCTGATTCttaaattaaatctttaaaactTACTCTGATCCAAGAATTGGAGAATGTAAGGATGTATACCCAAAAGACATACGATTATAATTGGATTTTGAAGATAAGTGTTCCCAATGAGAACGTGCATGTTATTTTGGGTCATCTTTGTGCTTTGTTAGAATGTCTGCTGGGATAATAGATAAATTGTTtagtaatttatatatttatttaaaaaaaaaagactacatGCATTTAGGTAATTTAACTGATTTTCGTCCTTTAGcaaatttctttcattttgatGTTTCAGCTttggcgaaaaaaaaaaaaaaaaaaaaaaaaaacaacctcagTGCATCTCTACAATTATTTGACAGAAACAAATATTCATATTGTCCCATTTTACAATGGTATTTATTTGAAGTTCAAGTCAATACACTTGAGTAACAAAAATTTAGAACCCTAAAGTATCAATTCCATTAGTTTTCTTGACAGTAAacctacagtatttacagttgGAGCTTACAAGAACTGTACAGTGCTGTTTGTCACGGGGAGTCTGAGTGAGGATGGGAGTAGGGAGTGCATTCACTCTGCTCGTGACACAGTGAGAAATATCAGTGAAGAAAAACCAGTTAACATCACTGCTCTTCTCTTCATACATCGTGCTCATTAATTATTTTCCTTAgattaacaattaaaatcaagaacagaacaaaaacacaaacagggaTCCCAGACTCATTCATCTCCCCGTGTATTTGTGCATTattaaaactacaaaataaaggggaaaaacaaacaataataataataattattataataataatacatggtGAGAAAAACAGTCCCAAAACACTCTTTGGAATCCATGGCGTTTTGTGCAGGCACTCGTGGTCATGCGTTTTGGATGCTTATCTCGTGCCTATCTAGGCTTTCTTCATCTTCCCACTGTGGGTGGTTCCGTTCTCATGGTGCTTCCTACCATTGGTCAAACCATTTTCATGATGGACACCATTGCCATTAGAAACTAGAGAAGCACCGTTGGAAACAGCACCATTGGACAGGGCACCGTTGGCCTTGCCATTCAGACTCTGCTGCTCAGCATTCTTGGGAAGCCTCTTGCCCTTTACGTAGGCCTGGTACCAGAAATTGGAAAAGAGGATGAAGAAGAAAGTGCCGTACATCCAAATGAGGTGGAGGATGATGGGCATCTGATAATCACAGCTCTTCAAGAAGTAATACTGTGTAGCATGAATGGAAACCAGCACGAACTGAGTCAGCTGGATGGCTGTCATATATTTCTTCCACCAGAGGTACTTCTGGAACTGAGGTCCAGCAGCAGACAGGCCATAGTAGAAGTACATGATAACATGGACGGCAGAGTTTACCATGGCATGGAAGGATCCCATTCCACCGGGGACAAAGCTGATCCCCCACCACCAGGTCCAGGGCATGAAAGAATGGTGGAAGATGTGCAGGAATGTAATCTGACTGTGTTTTTTACGCAGCACGAAGAAGACtGTATCCATAAGTTCAATGAACTTTGAGAAAAGGAACAACCAGGCAACCCTGaccatCCTCAATGCCTGAGGACTGTCAGAGAAATCAACAGGATCACATCTCCACGTATAGCCTGTGAGCCACCCGGACATCAAGAACCTCATACACAATGAAGATAGACAGAAAAACCAGGGAAAAGTTGTAGAAAATCATCGGCCCTTTCAGTTGGAAGGGTTTACGGTTGGCCATTATCCGAGGGCCTGCATAGAGTACGAAGAAGAGGTAGCCGAGCAGAATAGCAGACATGGTCAGTGGACTGCCCATCAACGGGTAGCCCTCGGTCGGTGACTGTCTCCATGTTCGCCCTTTCTGGACTTCTTTCAGCAAGAATAGAAAAACCTTTAGGTCTACAGGTCTACTTCCCCTTTTTCCCCCTACACTTCAGAGGCTGCTACTGAGCGCCAGCGTGCCAAAACAAGTCCTGCTCTCCAGAATCAGATGAGAAACGGGTCCTGTGACAgagtcagagacagagagagcgtgatagagagaggagagaaggaggaagagggagaaagagagagagaaagagagtagtGAGAGATCTGCCGGGTGACTGGTACGGCTGGCCTCAGTCTCC

Function

NR:

description
PREDICTED: elongation of very long chain fatty acids protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57669 True 4155 lncRNA 0.41 10 15102476 15191970

Neighbor

gene id symbol gene type direction distance location
zgpat zgpat coding upstream 5263 15091371 ~ 15097213 (+)
rtel1 rtel1,LOC107579445 coding upstream 12545 15062627 ~ 15089931 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 50701 15045274 ~ 15051775 (+)
LOC103022023 NA coding upstream 107860 14972261 ~ 14994616 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 233737 14834224 ~ 14868739 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 21289 15213259 ~ 15225170 (+)
mknk1 mknk1 coding downstream 35180 15227150 ~ 15234385 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding downstream 60945 15252915 ~ 15257121 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding downstream 83456 15275426 ~ 15296603 (+)
LOC103028625 NA coding downstream 164842 15356812 ~ 15376156 (+)
G42648 txlng non-coding upstream 41029 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 44801 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 47596 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 82941 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 91502 15010480 ~ 15010974 (+)
G42807 NA non-coding downstream 186031 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 222707 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 228742 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 229182 15421152 ~ 15421453 (+)
G43035 NA non-coding downstream 843228 16035198 ~ 16037119 (+)
G42605 NA other upstream 203228 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 967930 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1245115 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1480434 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1580219 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 786516 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1248961 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1624631 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1756410 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1820497 17012467 ~ 17017856 (+)

Expression


Co-expression Network