G42810


Basic Information

Item Value
gene id G42810
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15414677 ~ 15415189 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57739
tctcagtattttgtggctgcccccttggcttgcatgactgcctgaagtctccgcggcatcgatttgaccagcttgtcgcaagtttccgcactcacagcttcccaggcagtggcgatgttctgcttcagttggtccagcgtagtaggctttctgtcgcgaattttccgcttgatgatggcccaaaggttttcaatgacattgaggtcaggcgagttggccggccatgccaaaacttcaagctgttttttagtgaaccaatctttggtcgactttgccgcatgagccggtgcaagatcctgttgaaatatgaagt
>TU57740
atcaggtgttcactgcacctgtcctactcgttagactaatcacaaaactcgttacctggaaaaaaatttgctcagctgagctttccaaaaggcccatttaggccatttaactgtgacactgttgttttattgaattagaataatggagaaaccgtttcattgaattagaataatttttattataattacaatcatcactttctcagtattttgtggctgcccccttggcttgcatgactgcctgaagtctccgcggcatcgatttgaccagcttgtcgcaagtttccgcactcacagcttcccaggcagtggcgatgttctgcttcagttggtccagcgtagtaggctttctgtcgcgaattttccgcttgatgatggcccaaaggttttcaatgacattgaggtcaggcgagttggccggccatgccaaaacttcaagctgttttttagtgaaccaatctttggtcgactttgccgcatgagccggtgcaagatcctgttgaaatatgaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57739 False 313 lncRNA 0.51 1 15414877 15415189
TU57740 True 513 lncRNA 0.44 1 15414677 15415189

Neighbor

gene id symbol gene type direction distance location
LOC111192508 NA coding upstream 1108 15404982 ~ 15413569 (+)
LOC103030416 LOC103030416,LOC108438642 coding upstream 11166 15383810 ~ 15403511 (+)
LOC103028625 NA coding upstream 38521 15356812 ~ 15376156 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding upstream 118074 15275426 ~ 15296603 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding upstream 157556 15252915 ~ 15257121 (+)
arrdc2 arrdc2,LOC108438640,LOC107753823,LOC107692233,LOC107656095 coding downstream 2143 15417332 ~ 15426995 (+)
LOC103032216 NA coding downstream 85099 15500288 ~ 15516495 (+)
wdr18 wdr18 coding downstream 105335 15520524 ~ 15636244 (+)
grin3b grin3b,LOC107656093,LOC107723849,LOC107602803,LOC107753820 coding downstream 254438 15669627 ~ 15788889 (+)
med16 med16,LOC107723868,LOC107753817,LOC107656090 coding downstream 390413 15805602 ~ 15826504 (+)
G42807 NA non-coding upstream 36069 15378001 ~ 15378608 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding upstream 222707 15102476 ~ 15191970 (+)
G42763 NA non-coding upstream 248983 15164715 ~ 15165694 (+)
G42648 txlng non-coding upstream 353230 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 357002 15057215 ~ 15057675 (+)
G42813 NA non-coding downstream 5523 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 5963 15421152 ~ 15421453 (+)
G43035 NA non-coding downstream 620009 16035198 ~ 16037119 (+)
G43063 NA non-coding downstream 836742 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 837034 16252223 ~ 16261729 (+)
G42605 NA other upstream 515429 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1280131 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1557316 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1792635 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1892420 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 563297 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1025742 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1401412 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1533191 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1597278 17012467 ~ 17017856 (+)

Expression


Co-expression Network