G42813


Basic Information

Item Value
gene id G42813
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15420712 ~ 15421122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57745
atttgtgttgtgaagaggtagagttggtatacagtgaatagccctatttgagtaatgttctaattcatattatggcaagaactgacccaagtaaagaaaaaaatatttgaaaaattgcaagaacttttaaagaaaggatccttaagtgcagtcaccaaTAAAAACCTTATGAAGAAACAtgctctcatcaggacagccCCAGGGAAGAAAGAACAAGAGTTACCCtggttgcacaggataagttcatcagagttaccagcttcagaaacaaGAAACTCAGAACTCAGAAAGTTCACAGCAACCAaaataagagccacctaaatgctttagaGTATTTTGAGTTGTTTGACACTTTTAAATCAGGTTTAATCAGTTAATCTTTTTTgatgttaataaattaaataaggaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57745 True 411 lncRNA 0.34 1 15420712 15421122

Neighbor

gene id symbol gene type direction distance location
LOC111192508 NA coding upstream 7143 15404982 ~ 15413569 (+)
LOC103030416 LOC103030416,LOC108438642 coding upstream 17201 15383810 ~ 15403511 (+)
LOC103028625 NA coding upstream 44556 15356812 ~ 15376156 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding upstream 124109 15275426 ~ 15296603 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding upstream 163591 15252915 ~ 15257121 (+)
LOC103032216 NA coding downstream 79166 15500288 ~ 15516495 (+)
wdr18 wdr18 coding downstream 99402 15520524 ~ 15636244 (+)
grin3b grin3b,LOC107656093,LOC107723849,LOC107602803,LOC107753820 coding downstream 248505 15669627 ~ 15788889 (+)
med16 med16,LOC107723868,LOC107753817,LOC107656090 coding downstream 384480 15805602 ~ 15826504 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding downstream 407246 15828368 ~ 15851254 (+)
G42810 NA non-coding upstream 5523 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 42104 15378001 ~ 15378608 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding upstream 228742 15102476 ~ 15191970 (+)
G42763 NA non-coding upstream 255018 15164715 ~ 15165694 (+)
G42648 txlng non-coding upstream 359265 15058618 ~ 15061447 (+)
G42814 NA non-coding downstream 30 15421152 ~ 15421453 (+)
G43035 NA non-coding downstream 614076 16035198 ~ 16037119 (+)
G43063 NA non-coding downstream 830809 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 831101 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 970308 16391430 ~ 16398266 (+)
G42605 NA other upstream 521464 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1286166 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1563351 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1798670 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1898455 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 557364 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1019809 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1395479 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1527258 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1591345 17012467 ~ 17017856 (+)

Expression


Co-expression Network