G43035



Basic Information


Item Value
gene id G43035
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16035198 ~ 16037119 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU58039
attgtgggggaaaatcaacatttattccATGTATTCCTGATTTACTTCATGTATTCATAATCAATTATACTGATTAttcctgttaatcattcaatattcatcctgttaatcattcaatcagTATTTTATCATTGAGTGTTATGTGAACTTATATTCTCTGATAAGGCCATTCATTCAGACTTAAGGGCAAAGATTATAAAAGCAGGGGTCTGCCTGGAGACTAGCGGGTCATAGCAAATGGtgtttttctgatttatgaattattctctCCTAAAGAGATGGAAATCAAGTTTGCCTGGAAACTGTTTTGTCAGAGTAAAATAGAGCTttctgatttatgaattattcttgACTTTTGCTTATTCGTGCGTTTTCTGTTCCTCTTTTTAAGAGAACAGACGTCCAGTGTTTTTTCAGCATCTTTTCTCTTGTTAGGTCCCAATCTTTTATTCCATATATGGTAGTGACCTGTTCCAAAACAGATCACGAGGGGATTGCCTCATGTATGCAGGGGGGACTGTATAAAGACGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTTTTTTCATCTTCATTCATTGCTTTGCTTTTCCTTTTgcaacttcaaaataaaaacctatTCTTTTGGCATCCCGGGTCTTCCTGTCGTTTGTCGATTTCCACGACAAATTGGCGTCCCTGGGTGGGCTGCTCGTGCACCGGGACCTCTAGACCCTGCAAGAAAAGCGGAGGACGctcttgggttaaaaaaaaaaaaaaagaaacccaaCCTTAGAACCTCAACTGTTTTTTAGAGGAAAAGGCGTTTTCTCTGGGGGTCGAGGGGTGTCCGGGGCCGCTGCAGCCGCACCACGTGtgagtatatttttatttttatccttcCTTGTCTGGGTTTGAGCCCCCTGGCACATAGGTGAGTTTAGTGTGAAGAGGTTAGAGGCAAAAACCCAGGAACATGTAATTCTTTGGTGCTGTGTGTTTGCCTCAATCCGAGATTTGGGGCATAACCCAGAGAAACTGGTTCCTGGGGCCGGATAACCCGCCTTTGTATGACGATATTTAAAGGTTAAAGATTTTTTcccctgtttttttgtgaaaacggAGGGCACAGTTTGACGGGGCTGTGAGCAAGTAGAAATGCGATAGGATCGCAAAACCTGCTTGTGAGTAAACGGATCGATCCGCTCATCTGTGTGTTGAGAACGGGGGGTTTCGGGCCAGAGGGGAAGCTTTgttaaagtacattttctaaGGGAAAATGAACGGGGATGCCGAAAGACAAGTGTCTTATAAATTTTTTTTgctatctaatttttttttggctttgctCCGCACCGCTTCCGTTTTTTTCTCACTTCTAAATTTTTCTGTCTGGTTTTTATCCTCTCGTCTTTTCCTGTTTAGAGTGAGTGAAACAGAAGTGTGTGCGACAGTGCGACTgacagagaggaaaagaaaagggtGTACGAGTGTCTGTTAAAGGGATTAAAAgtggcagtgagtgagaaagtgtaTGGCAGCgaattaaagagtgtgtgtaaggCAGGGTGAGTGAAACTGTGTGAGAGCGGGGCTGATTGAGTGTACGAAGTCGTGAGTGACAACGAAATAGGAAATGGATGAGTCCCACTGCAGGGGAGGAGTCCAAGGTGAAGTAGGTGGAGTTGGTCCAGCCTATTGGTTTTAGACTGAGAGGTTGGTTATTTGTGAATTAACGCTTGTGAGATATCATAGAAAATAGAACATAAGTTCAGTAGGGAAATAGAATAATACACAGTGAAAACAGGGGAAAAAGGCTTTTGTATgggtagatata

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU58039 True 1827 lncRNA 0.42 2 16035198 16037119

Neighbor


gene id symbol gene type direction distance location
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 58525 15963205 ~ 15976673 (+)
LOC103035507 LOC108437275 coding upstream 77437 15948996 ~ 15957761 (+)
misp NA coding upstream 90002 15931709 ~ 15945196 (+)
palm palm coding upstream 105357 15866704 ~ 15929841 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding upstream 183944 15828368 ~ 15851254 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding downstream 17540 16054659 ~ 16200071 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding downstream 279468 16316587 ~ 16352239 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding downstream 321598 16358717 ~ 16365153 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 362425 16399544 ~ 16412008 (+)
LOC103039257 NA coding downstream 377084 16414203 ~ 16434080 (+)
G42814 NA non-coding upstream 613745 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 614076 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 620009 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 656590 15378001 ~ 15378608 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding upstream 843228 15102476 ~ 15191970 (+)
G43063 NA non-coding downstream 214812 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 215104 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 354311 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 478538 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 665131 16702250 ~ 16704192 (+)
LOC103036127 cunh19orf24 other upstream 50566 15978486 ~ 15984632 (+)
G42605 NA other upstream 1135950 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1900652 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2177837 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2413156 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 403812 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 779482 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 911261 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 975348 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 1156419 17193538 ~ 17196116 (+)

Expression



Co-expression Network