G43062


Basic Information

Item Value
gene id G43062
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16252223 ~ 16261729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58077
gccgttataaaataaatctgttattACTTTGCACTTTTTAGTTTAGGAATAGAATATTAATAGGGAAACTAGGAATATATAagtttatttggattttatttctgtattattacttttagaATGTACTATTTATCTTTTAAGTTGAGTAGTTAATGGTAGTTTAGCTATTTATACTTTAaacttttacactgacagagtttaatattatttaatttactattaGTTGCTAGTTTAGTTAATTTGTTTACTTAGatccactaatataatttagttCAGAATATACACCTTTAGTTCTACTTTTTTCAATAACCCAACAActtcagtaaatcagtaaacccacaataaacaaatacaaatgtgttgaaacaataaataaaattaaaataaaataagctcaGTCTCTCAATCACTTTTCTTTGTCCTACCACATGACCAGGTAATTTGAAATGGACTCAAGAGTAGTCTTTTAGCTCAGTTCTCCTTTGGGTGGCTCGCCATCGCTTTCACAGAAGAGGGTCCGAAGTCAGGCTGAGGGAATCTTCTCTCCCAGGTTTCCAGCGCCCTCAAAAAAACCTGACCTGCTTAAGCAAGCAGGTACAGAAACTATTACTTCTAAATATCACTGACCATTACTCTGTAGTCACATTCAGTTCAACATATAACCCCAAATAATTtccttaatataaaataaaacctcttATTAACAGTATTAACATTTCCCTTTACAGATTTTACAGGAACGTAACAGGTTCTAATGCtacacaacatattacaatGTACATATAAACTTCAATAAACCTTTCAAAAAAATCAACAAGGGCAGTTCTTTtctttacacacattacacacaacttATTGGAAATATACCTCTTGGATGAACGGGTATCCTTTTTGGTCCTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58077 True 903 lncRNA 0.31 3 16252223 16261729

Neighbor

gene id symbol gene type direction distance location
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding upstream 52152 16054659 ~ 16200071 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 275550 15963205 ~ 15976673 (+)
LOC103035507 LOC108437275 coding upstream 294462 15948996 ~ 15957761 (+)
misp NA coding upstream 307027 15931709 ~ 15945196 (+)
palm palm coding upstream 322382 15866704 ~ 15929841 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding downstream 54858 16316587 ~ 16352239 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding downstream 96988 16358717 ~ 16365153 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 137815 16399544 ~ 16412008 (+)
LOC103039257 NA coding downstream 152474 16414203 ~ 16434080 (+)
c5h19orf25 cunh19orf25 coding downstream 184991 16446720 ~ 16449054 (+)
G43035 NA non-coding upstream 215104 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 830770 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 831101 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 837034 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 873615 15378001 ~ 15378608 (+)
G43097 sgta,LOC106613600 non-coding downstream 129701 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 253928 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 440521 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 453831 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 460710 16722439 ~ 16722646 (+)
LOC103036127 cunh19orf24 other upstream 267591 15978486 ~ 15984632 (+)
G42605 NA other upstream 1352975 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2117677 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2394862 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2630181 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 179202 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 554872 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 686651 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 750738 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 931809 17193538 ~ 17196116 (+)

Expression


Co-expression Network