LOC103040819 (reep6,LOC107698004,LOC107745351,LOC107658751)


Basic Information

Item Value
gene id LOC103040819
gene name reep6,LOC107698004,LOC107745351,LOC107658751
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16440931 ~ 16446287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58127
TCAGCGAAACTGCAGAGCGCTCACCTGCTTCACTACTGATGTCCGCGTTCATATTTACTGCTTTTAATCCTTTAAAATAACCTTTATTAACTCTGTTCACAATGCTGTCTATTTTCACTAAGATAAAAACGCGCGTGGAGGCTTTTCTCAACGAGAAGAACATCGTCACGGACTGTTTGAACAAAATCGAGGAAAAGACTGGAATTAAAAAGCGCTACCTGGCCATAGGAGCTGTTTCTGTTACTGGACTGTATCTGTTGTTTGGGTATGGAGCCTCCCTGCTCTGCAACTTGATTGGTTTTGTTTATCCTGCATATTTCTCTGCCTGTTCTTGTTGTGGTGCATGGCCCCCTTCTCCTGGAATGGCTCTCAGGTGCTGTATAATCACTTAGTACGGCCATTTTTCCTCAAGCATGAGGCGACTGTGGACAACATGGTCAGCGACCTTAGTGGGAAGGCCATGAACGCTGCAGAGTCTGTCACAAGAGAGGTTATTCAGAGTCTGGCGAAAAACAGGATTCCCTTATCTGAGAGAATGGATACATCCAAACAGCTTCCCAGTACATCTCGTAATGAACCCACTGTAGACTAAAATCTTTGCAGGTAACTGCATCCTCTCAGGTGAACTCATGACCTCTTAGATGCAAATCAACCACCAGGACTTCAGCAGACACAAGGACTTATACACAATGGGATTGAATATGTTGTGTTATGTAAGATACATTATGTAAAATACAAATAGATTGGTGACAACTCAGTGTTTCATTTCAATCCTGTATTATTTAAGGTAGTATCTGAATACTGTAGAATTAGAATAACTGTGGATAACAATAATAACTGTTTCAGTTTTAGCTGTACTGTTTTCACTTCAAAAATGTGCTTTAATGCAATGGAAGTCTTCAACTCTGCTGGACAGGATATTTTCTATAAAATGTCCTATTTTAATGTGTACACCTTTTCCTAGTATATCAGATCAGCCAAACATTCCTCTCCTTTTAGGTACAGACCACATAATAGAACACAATACAACTAACATTCT
>XM_007240210.3
tCATAAAGCCGATTGGGGGATGAATTGAGCTCTGGCATGTCAGCGAAACTGCAGAGCGCTCACCTGCTTCACTACTGATGTCCGCGTTCATATTTACTGCTTTTAATCCTTTAAAATAACCTTTATTAACTCTGTTCACAATGCTGTCTATTTTCACTAAGATAAAAACGCGCGTGGAGGCTTTTCTCAACGAGAAGAACATCGTCACGGACTGTTTGAACAAAATCGAGGAAAAGACTGGAATTAAAAAGCGCTACCTGGCCATAGGAGCTGTTTCTGTTACTGGACTGTATCTGTTGTTTGGGTATGGAGCCTCCCTGCTCTGCAACTTGATTGGTTTTGTTTATCCTGCATATTTCTCAATAAAGGCTATTGAGAGTCCCAATAAGGAAGACGATACACAGTGGCTCACGTACTGGGTGGTGTATGGATTCTTTGGTGTGGGTGAATTCTTCTCTGACATCTTTCTCTACTGGTTTCCTTTTTACTATGTATTCAAGTGCCTGTTCTTGTTGTGGTGCATGGCCCCCTTCTCCTGGAATGGCTCTCAGGTGCTGTATAATCACTTAGTACGGCCATTTTTCCTCAAGCATGAGGCGACTGTGGACAACATGGTCAGCGACCTTAGTGGGAAGGCCATGAACGCTGCAGAGTCTGTCACAAGAGAGGTTATTCAGAGTCTGGCGAAAAACAGGATTCCCTTATCTGAGAGAATGGATACATCCAAACAGCTTCCCAGTACATCTCGTAATGAACCCACTGTAGACTAAAATCTTTGCAGGTAACTGCATCCTCTCAGGTGAACTCATGACCTCTTAGATGCAAATCAACCACCAGGACTTCAGCAGACACAAGGACTTATACACAATGGGATTGAATATGTTGTGTTATGTAAGATACATTATGTAAAATACAAATAGATTGGTGACAACTCAGTGTTTCATTTCAATCCTGTATTATTTAAGGTAGTATCTGAATACTGTAGAATTAGAATAACTGTGGATAACAATAATAACTGTTTCAGTTTTAGCTGTACTGTTTTCACTTCAAAAATGTGCTTTAATGCAATGGAAGTCTTCAACTCTGCTGGACAGGATATTTTCTATAAAATGTCCTATTTTAATGTGTACACCTTTTCCTAGTATATCAGATCAGCCAAACATTCCTCTCCTTTTAGGTACAGACCACATAATAGAACACAATACAACTAACATTCTGAAGTATAGTgtgttactattattttttttatattggtaTTAAATGTCatcattttgtttaattattaatattttttgtaacttTAACAAAAGTCCACAACTTTAACTGATTTTCAAtaaatttgttttgtatttaacaTTC

Function

symbol description
reep6 Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6).

NR:

description
PREDICTED: receptor expression-enhancing protein 6 isoform X2

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
TU58127 False 1039 lncRNA 0.40 6 16440970 16446145
XM_007240210.3 True 1359 mRNA 0.38 7 16440931 16446287

Neighbor

gene id symbol gene type direction distance location
LOC103039257 NA coding upstream 6851 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 28923 16399544 ~ 16412008 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 75778 16358717 ~ 16365153 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 88692 16316587 ~ 16352239 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding upstream 240860 16054659 ~ 16200071 (+)
c5h19orf25 cunh19orf25 coding downstream 433 16446720 ~ 16449054 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding downstream 59728 16506015 ~ 16525082 (+)
LOC103042034 LOC108437262 coding downstream 252704 16698991 ~ 16701356 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 261767 16708054 ~ 16712430 (+)
nrtn NA coding downstream 280912 16727199 ~ 16759637 (+)
G43097 sgta,LOC106613600 non-coding upstream 42665 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 179202 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 187237 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 403812 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 1019478 15421152 ~ 15421453 (+)
G43136 NA non-coding downstream 69370 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 255963 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 269273 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 276152 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 301539 16747826 ~ 16748678 (+)
LOC103036127 cunh19orf24 other upstream 456299 15978486 ~ 15984632 (+)
G42605 NA other upstream 1541683 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2306385 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2583570 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2818889 13617083 ~ 13622042 (+)
LOC103044285 NA other downstream 370314 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 502093 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 566180 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 747251 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 1186809 17633096 ~ 17768954 (+)

Expression


Co-expression Network