G43136


Basic Information

Item Value
gene id G43136
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16515657 ~ 16530444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58172
ccaatttacacggccaattacccaacccattcattaggactccccatatcactagtgatacctcaacacaccaggagggtgaagactaacacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagcattaccgagcagccagcgcgcttggaggaaagcacagcggctcggctctggtacatcagctcacagacgccctgtgctgcagacatcatgatgtggggagagagcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58172 True 261 lncRNA 0.54 2 16515657 16530444

Neighbor

gene id symbol gene type direction distance location
c5h19orf25 cunh19orf25 coding upstream 66603 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 81577 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 103649 16399544 ~ 16412008 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 150504 16358717 ~ 16365153 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 163418 16316587 ~ 16352239 (+)
LOC103042034 LOC108437262 coding downstream 168547 16698991 ~ 16701356 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 177610 16708054 ~ 16712430 (+)
nrtn NA coding downstream 196755 16727199 ~ 16759637 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 321648 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 329678 16860122 ~ 16863161 (+)
G43097 sgta,LOC106613600 non-coding upstream 117391 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 253928 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 261963 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 478538 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 1094204 15421152 ~ 15421453 (+)
G43163 vmac,LOC107680554 non-coding downstream 171806 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 185116 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 191995 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 217382 16747826 ~ 16748678 (+)
G43196 NA non-coding downstream 256127 16786571 ~ 16787612 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 69370 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 531025 15978486 ~ 15984632 (+)
G42605 NA other upstream 1616409 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2381111 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2658296 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 286157 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 417936 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 482023 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 663094 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 1102652 17633096 ~ 17768954 (+)

Expression


Co-expression Network