G43163 (vmac,LOC107680554)


Basic Information

Item Value
gene id G43163
gene name vmac,LOC107680554
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16702250 ~ 16704192 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58201
CCAACTGACCATGTTTTTTTGAGGCACCAGTtaactctgtaaaaaataaaagatagcATACACACACTCCTATACCGAGCAGTAACAAGACGCACGCCCTGATATCACAAGAACTGTGCCATGATGCATTAGCACATTTCACCTTTGCATAAAACAAAGAGGAAGATatttaacagttgtttttttttaagctgtaatGTTCAAAATAGGACGGTTGAGACACTATCAGAATATGTGCAACAGTTACCCACTTGAATGAGAGAGCCTTTGTGAAGGACTAAATGCAACAATCAATCCTGTATGTATGACTGGACAACCATAATCATTCCATTTCCAGATGATACCTACACACATTAAAAGAAGATTTAAACTTGCATAGACTCGGTtccaaatactaaataaaaaaaatacaattttgcaACCCAAATAATTATTCACTGCCACATTCAGGCAAACAAGACTTGTTTACGTCCTTCCCTGGACCACTGTTACTGTTTCTTTGAGAAAGTACACCATGTATAGAAATACTCTATCTTTTTCCAACCCCCTCAGTTGTACTATGTGGTTGATTACCATGGATATTAATATGATCATGCCGGATTCAATTATGGCACTCCTGTTTTGGCAACCAGactctataaataaaataataaaagcattaCTTGACATTGGCATTCATTTTctataatgtattgtattacTTTTCTGTAACAAAAATGACTTATACTATGGTGAAAAAACAATTATTGTATTCAATTAAATTAGCTTTTGattgttttgttattaaagGGAAGTTAAAGTTATGGTTTGTGGTAATCAATCGAATGCTAGAGATATTGAATTTGGTATAGAAGCTGAAAACACTTGAGTATAcctttatatataaaactgtaaaatggtCTCTACAGGttcccttttctatctatcctAAAGTAACATTTGctggaacatttttaaaatttaagaatTGGTTGGTTTTAGGGTttgaaacagaaataaaactgtatgaacTAAAAGTGACCAGTCTGTAGTGCATCACATTAAGAAAATAAACTTCACATATAACTGCTCACAGCCTAAGGCCACCCTAGTTAACCATGCTCTTCCACAACTGCTCCATCACAGGCTCTGTCAACAGCTTGGGAACATCATGTTGAATCGCATCTGTGCTTACTGTACTGAAAGGTAGCTGTAAAGTAAAGATACACTGCTGACTGTAAAATATGTACCGAATCAACTGCAGACTAACCGCTTCTTATACAAAGTCACTGTCTGCATTTCTCTTAGAATCTGCTCGGGCCGACAAAGTTGGGAAACATAAAAGCCCTGTTCTGCTTTTCATACTGTAGTTCCAAACACAACACCATCCAGCTCCTGATCGTCCACGTCGTCCTCGCTGAGTGAGAAGTCTTTGTGATTGGAAAGGCCACTAGGGCTGCAATTGGAATCTCCATCAGTGAGCGATGTGTCTGCAGTGGGTTTGCTTAAGTCAATAACAGGTCCCATTCTTTCTGCCTCTGCCATTTGGGCCAGCATGCTGTCTAATAATGGACGGCTTTTGCAGATGTTGTCCAGCAGCTGACAGCGGTGCTGAAGCTGACTGATTAGGGAATCCTTCTCCTTCACCATGTGCTGGAGTTTCTGGATGGATTCTTCTGACTGATAAAGCTTTTCGTGGAGGTAGGAAATTtccc

Function

symbol description
vmac Orthologous to human VMAC (vimentin type intermediate filament associated coiled-coil protein).

NR:

description
vimentin-type intermediate filament-associated coiled-coil protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58201 True 1694 lncRNA 0.38 2 16702250 16704192

Neighbor

gene id symbol gene type direction distance location
LOC103042034 LOC108437262 coding upstream 894 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 177168 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 253196 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 268170 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 290242 16399544 ~ 16412008 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 3862 16708054 ~ 16712430 (+)
nrtn NA coding downstream 23007 16727199 ~ 16759637 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 147900 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 155930 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 227308 16931500 ~ 16936906 (+)
G43136 NA non-coding upstream 171806 16515657 ~ 16530444 (+)
G43097 sgta,LOC106613600 non-coding upstream 303984 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 440521 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 448556 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 665131 16035198 ~ 16037119 (+)
G43180 NA non-coding downstream 11368 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 18247 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 43634 16747826 ~ 16748678 (+)
G43196 NA non-coding downstream 82379 16786571 ~ 16787612 (+)
G43198 NA non-coding downstream 134299 16838491 ~ 16843005 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 255963 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 717618 15978486 ~ 15984632 (+)
G42605 NA other upstream 1803002 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2567704 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2844889 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 112409 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 244188 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 308275 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 489346 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 928904 17633096 ~ 17768954 (+)

Expression


Co-expression Network