LOC103044285


Basic Information

Item Value
gene id LOC103044285
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16816601 ~ 16819251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58232
GCAGAAGTGCAGTGGATCCTCAAAGTGAACAGaagcaacagcagcagaactCCTACTGGCTCTCTCTCACGACTTCCTAAGACAAGAAAGATCAGAGGATAAAGCCAAGCCATGAAGACTCATGCTCTCTTCTTCCTCCTGCTCCTGGCTTGCATGTACCCAAGCTTGGCACAAGGTACTTACGAAAACTGCTGCTTAAAGTATGCTAACGAGGTGAAAGCCAACGTGAAGAAAAGGATTGTGAGCTACAAAGTTCAGCAAACTGACGGGGGGTGCAACATCGCTGCTGTTGTATTCAAGCTGAAGAAAGGGAGAACATTCTGCGGTGACCCCCAACAGCCATGGGTGAAGGAtctgatgaaaaaaaacaaacgtaTCTAAAATCACCACTCTGGGAGCCATAATGATATTTTGAGACCTAGTCTTTCCTACGGTCTTCACACTGTGGCATGATCACCATGAGCAATGTCACCAAGATCCTGCGCTATGACTGAGCATCTACAGCTCATATCCTTAATGTAGCCTATTACTCACTGTAAGGAATGTAGAGCCATGTGGAGAAATGTGGAGAAATGTAGAGAAATGTGGAGGAATGTGGAGGAATGTGTGAGGTGGGTTGTAAGTGCACAAGTTTCTTTAAGCTTCACTCTGAGCCTTGTATTCATAATCAAAAACCGTGAATAATGAtatgaaattaatttaatacCTACGCCACACATTTCCACTCAAGCTGCGCAGAGAGCAAAGGCAGCGTATGCAGACTTCATGTCTTTTGAATGTCTGTACTGCAGTTCAATGTGCACATAtagttttttatgtgtttttaaaatgatcatGTTTTATATGCTGCCGCTCTGAATGTCGTGCTACTGCACTCCCAGTGTTTAGTcctgtctgttttgttttctaagATATGTTTGAATCTTTTTGAGACAGATGTTGTTGAgcctttatacattttttacagaacaattttttttaccatttaaattttttcttATGCATTAAATGACATATAATATTGTGCCATAAGTGTCACAAGTCTAAATgtgaaagagacaaagaaagagatgtCGAGAGAAGTCTGTAATGAGTTTGTttgtaataaaatactaaaatcacAATGATCTTTTgtatcattttctctctttataaatctctttaaa
>XM_007240221.3
GGTGGGCTgccataaatgggaagaagctccCCCAAACGGAGCAGAAGTGCAGTGGATCCTCAAAGTGAACAGaagcaacagcagcagaactCCTACTGGCTCTCTCTCACGACTTCCTAAGACAAGAAAGATCAGAGGATAAAGCCAAGCCATGAAGACTCATGCTCTCTTCTTCCTCCTGCTCCTGGCTTGCATGTACCCAAGCTTGGCACAAGGTACTTACGAAAACTGCTGCTTAAAGTATGCTAACGAGGTGAAAGCCAACGTGAAGAAAAGGATTGTGAGCTACAAAGTTCAGCAAACTGACGGGGGGTGCAACATCGCTGCTGTTGTATTCAAGCTGAAGAAAGGGAGAACATTCTGCGGTGACCCCCAACAGCCATGGGTGAAGGAtctgatgaaaaaaaacaaacgtaTCTAAAATCACCACTCTGGGAGCCATAATGATATTTTGAGACCTAGTCTTTCCTACGGTCTTCACACTGTGGCATGATCACCATGAGCAATGTCACCAAGATCCTGCGCTATGACTGAGCATCTACAGCTCATATCCTTAATGTAGCCTATTACTCACTGTAAGGAATGTAGAGCCATGTGGAGAAATGTGGAGAAATGTAGAGAAATGTGGAGGAATGTGGAGGAATGTGTGAGGTGGGTTGTAAGTGCACAAGTTTCTTTAAGCTTCACTCTGAGCCTTGTATTCATAATCAAAAACCGTGAATAATGAtatgaaattaatttaatacCTACGCCACACATTTCCACTCAAGCTGCGCAGAGAGCAAAGGCAGCGTATGCAGACTTCATGTCTTTTGAATGTCTGTACTGCAGTTCAATGTGCACATAtagttttttatgtgtttttaaaatgatcatGTTTTATATGCTGCCGCTCTGAATGTCGTGCTACTGCACTCCCAGTGTTTAGTcctgtctgttttgttttctaagATATGTTTGAATCTTTTTGAGACAGATGTTGTTGAgcctttatacattttttacagaacaattttttttaccatttaaattttttcttATGCATTAAATGACATATAATATTGTGCCATAAGTGTCACAAGTCTAAATgtgaaagagacaaagaaagagatgtCGAGAGAAGTCTGTAATGAGTTTGTttgtaataaaatactaaaatcacAATGA
>XM_022669702.1
gaagctccCCCAAACGGAGCAGAAGTGCAGTGGATCCTCAAAGTGAACAGaagcaacagcagcagaactCCTACTGGCTCTCTCTCACGACAAGAAAGATCAGAGGATAAAGCCAAGCCATGAAGACTCATGCTCTCTTCTTCCTCCTGCTCCTGGCTTGCATGTACCCAAGCTTGGCACAAGGTACTTACGAAAACTGCTGCTTAAAGTATGCTAACGAGGTGAAAGCCAACGTGAAGAAAAGGATTGTGAGCTACAAAGTTCAGCAAACTGACGGGGGGTGCAACATCGCTGCTGTTGTATTCAAGCTGAAGAAAGGGAGAACATTCTGCGGTGACCCCCAACAGCCATGGGTGAAGGAtctgatgaaaaaaaacaaacgtaTCTAAAATCACCACTCTGGGAGCCATAATGATATTTTGAGACCTAGTCTTTCCTACGGTCTTCACACTGTGGCATGATCACCATGAGCAATGTCACCAAGATCCTGCGCTATGACTGAGCATCTACAGCTCATATCCTTAATGTAGCCTATTACTCACTGTAAGGAATGTAGAGCCATGTGGAGAAATGTGGAGAAATGTAGAGAAATGTGGAGGAATGTGGAGGAATGTGTGAGGTGGGTTGTAAGTGCACAAGTTTCTTTAAGCTTCACTCTGAGCCTTGTATTCATAATCAAAAACCGTGAATAATGAtatgaaattaatttaatacCTACGCCACACATTTCCACTCAAGCTGCGCAGAGAGCAAAGGCAGCGTATGCAGACTTCATGTCTTTTGAATGTCTGTACTGCAGTTCAATGTGCACATAtagttttttatgtgtttttaaaatgatcatGTTTTATATGCTGCCGCTCTGAATGTCGTGCTACTGCACTCCCAGTGTTTAGTcctgtctgttttgttttctaagATATGTTTGAATCTTTTTGAGACAGATGTTGTTGAgcctttatacattttttacagaacaattttttttaccatttaaattttttcttATGCATTAAATGACATATAATATTGTGCCATAAGTGTCACAAGTCTAAATgtgaaagagacaaagaaagagatgtCGAGAGAAGTCTGTAATGAGTTTGTttgtaataaaatactaaaatcacAATGA

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58232 False 1166 lncRNA 0.40 4 16816641 16819251
XM_007240221.3 True 1167 mRNA 0.41 4 16816601 16819212
XM_022669702.1 False 1135 mRNA 0.41 4 16816623 16819212

Neighbor

gene id symbol gene type direction distance location
nrtn NA coding upstream 56964 16727199 ~ 16759637 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding upstream 104171 16708054 ~ 16712430 (+)
LOC103042034 LOC108437262 coding upstream 115245 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 291519 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 367547 16446720 ~ 16449054 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 32841 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 40871 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 112249 16931500 ~ 16936906 (+)
plvap NA coding downstream 126039 16945290 ~ 16946977 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding downstream 156393 16975644 ~ 17010525 (+)
G43196 NA non-coding upstream 28989 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 67923 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 93955 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 100806 16715560 ~ 16715795 (+)
G43163 vmac,LOC107680554 non-coding upstream 112409 16702250 ~ 16704192 (+)
G43198 NA non-coding downstream 19240 16838491 ~ 16843005 (+)
G43233 NA non-coding downstream 211258 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 219320 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 239158 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 246096 17065347 ~ 17072232 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 370314 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 831969 15978486 ~ 15984632 (+)
G42605 NA other upstream 1917353 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2682055 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2959240 13810833 ~ 13857361 (+)
LOC111192574 NA other downstream 129129 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 193216 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 374287 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 813845 17633096 ~ 17768954 (+)
G43537 NA other downstream 1192922 18012173 ~ 18014499 (+)

Expression


Co-expression Network