G43198


Basic Information

Item Value
gene id G43198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16838491 ~ 16843005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58244
ccattACCCatatggaaaatatatatatattgtatttatgcAGCATATCAGTTAATTAAtagcaaatatctgtgcttgcTTTCATGGCTGCAGTAAACTGCTTGccttctattctgttctatacTTGGCAACCCAGGTGTTCTGCCTGAAGCTCTGCTGCCAAGTTATGAGTTCCTACAGAAAATAAGACTCATAGGTAAAGATATACAGTAAAGATAAAGTATGATTGTGTGATATTTCTTTTGGAAACTAGGAACTAAGGGAATTAGAcctaaatatgtatatttttgataaatacatatatatatatatattttccaatgTAGGTTTGATAGCATAaagacagtaaaataaaattacatatatatgtttCTATAAAACCGTACCTGGCCAAACAGTAAGCCAGATTAATCAAAAGTGCAATGACAATGGCTTATGCACATCTGACATAGTCAACATTCCATACTGAAGTGTGGAAAACCGGGTAATATAAAAGTACTATTAGTGTTACATTCTCTCAAGCTGCTGTTTAGAAGCAACCACTCCAGATTTAACACAGTGGAAAGTCTTCTCAAACTGACACATTAGCTGACTGCCACAGAGTAACTGTGCACTGATTTGTAGTGAAACACAATCCCAGTGATTAATCCTTTGCGTCACACACTCGCAGTAAGCCTGCGGTCGGGAAAATGCTAAGCGGTATTATGTCTTTATAATTGACTCAAGGACGGGCCTCCTACACACAGGCTAAATTGGTGGATACCAGATTAAATGGATCAAATGCTCCACATTGACATTTACACATTggagtgtaaaataaaaataaaaaatctgttaaCTGATTAATTaccatttgtttaaaaaatatgattgatTCCAActggttaaaaaaatgtaatctgattaatcacaacaatattctgtgattaactgcaattaattgcacttgtttttcttaagatgcaagtttttatagtggatattttaatgtaattaaaagaaTGGATGTAAGAAAAGTAAaaagcaattatatttatattagtagtGTCAActgaaatattgtatatttgagAGGACAACAAGGggcactgaaataaaaaatgcattagaAATTGGATTTTGGCTTTATCAGATGTTTATCTCAATtgaaaaggagtatatttgatagccgGGTTTAGATCGATACCAAGTCATGTTTCACCCCAAGCGAACCGGTCCAGAAAAAATATCTGCACATTGGGTGGGGGCTTGGCAGATTCCGGCAGAAGTTGGGGTAAAACTTGGTGACgtaattaatttaagtaaaaaaaaacaataaagcatTACTGGTTAAAAGAAAAGTTAATGCTTTAACGCTGACAGccctaaaaaatatttatatataagctatagataaaataagatatactTTATACTTTGAATTAACTATTAAACGTAGCAGCATGTATGCAAAGCTCACTTGgtaataattaaacattaaatacactGTATATCAAAATCAGTACAAGAGTAAAGTCACCGCTAATCAGTTTGCTTTACTATACGTATATTGTTGATTGACCATCACACATTCCTATTAGAGACCGGAACCACGTCTTAATGTCATATAATATCACTTGAACTGAAACACgttatttcagtttaaaagcACCAAAAGTCTCCCAATTCATTACAAATATACCTTATTGCTTTATTACAAAAATAGATAAAGCTAAAGAGAACCATTGCATGTGGCTGGAATAAACTTATAATTAATGATGACAGATAAAACTATAAATCACAAGAATGCAACATGTCACATCCCTGCAAATGTAGTATTCGTAGTATTGGTGCtttactatttactgtattaatgttCGTATCTCCCAGTACTTCAGAGGCCCTGAATCACTCATCCCTGCTCTAATTTCACTGATCCCTTATCACTGATTCAACTAACCAGCTAATTCACAAGCTCTTCCTGAGGTAAAGTGAACATTCTAGCAGGAAATCACTTAAATGTACAGTgccatatatttttaattatttaattatatataattatatatctgaTATGCAAAAGGGCCTGTAATCCCAGTTTTCCTCAAGGTTCACTTATAAGGTTTTTGTCataaaaaatgccttaaaaagatGATCAGATCATCAGATTTTCAGATTATTCACTCTTAACAACATTATCACAACTTAGTGCAGTTTCATAGGCTTGCAAATGGAGCCCTTTGGGATGCCACGAAACATGCTGAACTAAAGCAGTCaataaatatatcacaataGTTATGAATGTGCATTAacattaataactaaataattatcCTAGAGGTTAACAAGCATTAGAATTCCCAATTTCAGCTGCTCCCACTTTCTTAGCACATTTAAAAATGGATGTTAGAGGGTTACTAAATGCACAGGGACTGGGTATAGTGAGGGCCGGTTGAGTTACAgcttagccaatcagaagcttttcttcttcttacatCATCACCGCCTCCAATAGAGGTGTCAACTTTCTGAAGGCCGCCAGCCGCAGCTACGTAATAGACAAATCAGGCCCCTTGGCTACGTCCCAATTGcgcactacacactaatactgTGAGACATTACACTCAGGGACACACTCAaacaatgtgtttatttgtgtatacTTAACTTGCAGACCTTTACCTAAACTACACTTTATACTCAACATCTAGTTAGTATTAGGAATTAATatgcaattgggacacacccaACTTTCTTTTTAACCAAGTTGCTGCATGAAGTACACTATTGgcaaaaagttttagaacatccCTATTTGTAAATtgtcagttttagtttttttccccttaaaagCCAAGTAAATTTACTTCTAAATTTTATACCATTTAAAGGTAACATACtataaataactatttttacacaaattagaATAGGTCTAAGGGCTatacaaaacaagttcataaaattctttgcacaaaatcacccTTAAATAAAGAAACTCACCCGCTCTATACTTGCCAGCTTCAGTCCCTtacagaatgagccatttaggagctctgtcacttttatgcaaataatctGTTGCTGGCCACTCTATGTATAAgattagcttgtgctaaatggcaaaacacgaacaagctagttcatgcttaactgcaatagaagcacaaaactcattatttgaatgCACTTAAATCTTCCTTATCTGGTGACTTCTTGCCACAAACCCACCCTGACTAGccacagattcctccctcagacgaagtctgctgggtacttctgctgtgtactgtatGAGTTTGTCAACCAGCAGACAAAAATTAGAGTGTTTTTAATCTTTTGACCTGtagttttttgtattattatttagtttaaattCACCAACTCCACATGTCCCTGTGCACTGAGATTGCCTAGATACCTTGGAACTGCTTTTGACATTGGATAGAACTTCCCGTTTCAAATTTGGCACTCAAACAGGAGCTGAGAAGTGGATATTAACATGCATATACTGCGTGAAAACACTAcagcaataaaaaacaatttaaagagAGTATCAAACTGATTTCTACCACTGCACCTTTGTGAATAGGATTTCATTACCAGTTTTATGAATGTGACCCAGTACTGGAGAATGTACTCCCTGAACGTACTTGCTGAACATTGTAAACTTAGGCAACATGAGACTTGCCTAAGACTTGTTGATTTCATGCCAGATATTTATGATGTTGTTTACAAGGTTTAAGAGAAAGGACTATCTAAATGCACCACACTATGATGGGACCCAGAGGCCAGTCATTAAAGCACAGTGCAGACAGAGGACGGGTCGTGTTTGCTGTCCCAGTGCTTGCTGTCCCGAAAGTCCTCGGGATAGAGTGCGGAATACCCCACCATCTCCACTGACCTCCTCTTCTGAATGCTGTGCAGCAGGATGCGGTCAGGGGAGGGTTCGGCCAGGTGGTTGGGCGTGAGGCTGAGCGTGGGATAAGGCTTGGGGTAGTCGATGCCGCTCAGCCAGGAGCAGGACATGAGCTGGGAGAGGCTGCTTCGGTCAGGAGGCACAGGCCTCAGCATGCCTTTGATGGCCTGCTGGCAGGGCTCAGGCACGTGCTGGGGAACAGCGTACGACCCCTGCAGGATGCAACGCTTCAGCCGGCTCAGGTTGTCAGCGTGGAACGGCATGGTGGCGGTCACCATGAAGTAAAGCAGAACCCCCAGAGCCCAGATGTCCACAAAGAGGCCCACGTAGCTCTTCTCCCTGAACAGCTCGGGTGCGGCGTACGGCGGGGAGCCACAGAACGTAGTCAGAATGTCGCCAGGGCCGCTGATTGTGCTGAAGCCGAAGTCACCAACTTTAATACAGTAGCTGGTGGTGTAGAAGATGTTTTCAGCTTTAAGGTCACGGTGGACGATGTCGTTGTC

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58244 True 4401 lncRNA 0.38 2 16838491 16843005

Neighbor

gene id symbol gene type direction distance location
nrtn NA coding upstream 78854 16727199 ~ 16759637 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding upstream 126061 16708054 ~ 16712430 (+)
LOC103042034 LOC108437262 coding upstream 137135 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 313409 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 389437 16446720 ~ 16449054 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 9087 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 17117 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 88495 16931500 ~ 16936906 (+)
plvap NA coding downstream 102285 16945290 ~ 16946977 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding downstream 132639 16975644 ~ 17010525 (+)
G43196 NA non-coding upstream 50879 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 89813 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 115845 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 122696 16715560 ~ 16715795 (+)
G43163 vmac,LOC107680554 non-coding upstream 134299 16702250 ~ 16704192 (+)
G43233 NA non-coding downstream 187504 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 195566 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 215404 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 222342 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 233687 17076692 ~ 17080295 (+)
LOC103044285 NA other upstream 19240 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 392204 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 853859 15978486 ~ 15984632 (+)
G42605 NA other upstream 1939243 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2703945 14070423 ~ 14134546 (+)
LOC111192574 NA other downstream 105375 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 169462 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 350533 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 790091 17633096 ~ 17768954 (+)
G43537 NA other downstream 1169168 18012173 ~ 18014499 (+)

Expression


Co-expression Network