G43233


Basic Information

Item Value
gene id G43233
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17030509 ~ 17031395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58307
AGCTTTATCTCCAAAactcctacattctgtaaagtCAGATGAAGAAACAGATTCTCTCTCCTCTTACAGTGCGCTCAGGAGGTTCAGTATGTATCATTTATGAACTTACTACTAAAGGACAGGATACTGTAAGGAACGTTAATTTTAAAGGGCCTGTGACACATCATGGGCTCCGTTCGGTTAAGaagtaaattaaacattaataaatgataGGTGAATGGTCAATAATTTGGTAGTTAGCttaacctaggttagctgtaATGGAAAACTAACAAGCCCCGAGCCTTGACTAAACGGCTATGTCTAGGTTTAGGGGTAACTTACATATAGTTTGTGAGTTAAGgttttcagagagagagagagagagactcctGTAATTAGTTACCAGGAGTTAGTTGATATGCATACAAGCAAAAACTGGTCAGTTTAGCAGTTggcctagctaagctaactacacCTGAGCCGCTCGACACCCGTTCACTTAAAAACAACCTATAGCTCAAATAAACTGGCTGAATTAGCTCAACCTCCCGGGCCTTCTCCGAACTGAACTGCAGCTGGTGTAAAGGCGCTGCTCATATCGGCTGTTCTGCAGTTAAACAGCCGCACACCGCCGGGTTTTACTGGCTAAACGGGGCTGGCGGCGCTCGGCCACAACTACAGCCTCAAACCCAGCAAATCCACCGGCGTCTCCTCAAAATACCGACAGAAACGCGTCCATCAACACTAGCTCACAACTACTGTACAGAAACATGAGGGATATTTGCTGTATTCGCTGAGGATTCCTTTAGATTCACTAATTCAAGAATAAAACAGCACCCACCATCTTGAGAGATTCGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58307 True 841 lncRNA 0.44 2 17030509 17031395

Neighbor

gene id symbol gene type direction distance location
abhd8 abhd8 coding upstream 3385 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 19984 16975644 ~ 17010525 (+)
plvap NA coding upstream 83532 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 93603 16931500 ~ 16936906 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding upstream 167348 16860122 ~ 16863161 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding downstream 22016 17053411 ~ 17057107 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 215686 17247081 ~ 17253787 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 227970 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 270684 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 276213 17307608 ~ 17310257 (+)
G43198 NA non-coding upstream 187504 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 242897 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 281831 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 307863 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 314714 16715560 ~ 16715795 (+)
G43248 dazap1 non-coding downstream 7176 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 27014 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 33952 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 45297 17076692 ~ 17080295 (+)
G43254 NA non-coding downstream 48956 17080351 ~ 17083008 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 12653 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 80149 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 211258 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 584222 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 1045877 15978486 ~ 15984632 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 162143 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 601701 17633096 ~ 17768954 (+)
G43537 NA other downstream 980778 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 1092351 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 1113804 18145199 ~ 18152349 (+)

Expression


Co-expression Network