dda1 (dda1,LOC105913185,LOC107685208,LOC105012003)


Basic Information

Item Value
gene id dda1
gene name dda1,LOC105913185,LOC107685208,LOC105012003
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17012467 ~ 17017856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58309
tGGCGTTTTGAGCGCAGTGCGTCTGCTTTACTTTACGCGAGGCTGTTTGAGGGTGTTAGGCTCCGTTTTCCCCCTCAGAGCCCGAGCTGCGGTTTATTTCGTGAGGGACAGATAGTCAGCAGCAGCGGACGGGGTCAGAGAGTTGAGCCCCGGCTGGGCGGACAGTAGTTTTTCTTGTTTAAGGCGTTTCTGGGTCTGTTGTGTGGATTTGTCTGAGCGGCGGTGTGAAGTCTAGCCGGTGTAGTGTAGGGGCGCACTGGGCCCTGTGCTACTGTTAGCATAGCTGCGAGAGGACCGTCTCTAGGGCAGAATTCTGAGATTCAGCGCTGAAAAGGCGAAACGATGGATAAAGCGGATTTCCTGAAAGGTCTCCCTGTATACAACAAGACCAACTTCAGTAGATTCCATGCGGACTCTGTTTGCAAAGCATCGAATAGAAGACCGTCAGTATATCTGCCTACACGGGAATATCCCTCGGAGCAGATTATTGTTACAGAGAAAACAAATATTCTTCTGCGCTACCTTCATCAACAGTGGGACAAAAAgaaTGCAGCTAAGAAGCGGGAGCAGGAGCAGGGAGAAGGAGGAAGTCCTGCACCTCCACGCAAAATCGCCCGGACTGACAGTCAAGAAATGAACGAAGACTCCTAAATGGGATCGTTACCAAACAGCACAAGGACAGGCACAAAAATGACAGCCGTTTCAGAAGTTCATAATACCTTGTCTACATATTTATGTAGACACCTGCACATGAGACTGGAAtttacttaaagaaaaaaaaaacacaagaaagagATTGAAAGTGAGCAAGACCCTTTTTTATggtgtgcttttttatttttattaagcgCTTCCTGTCAACCTGTCTCCTTTTGTGTATCCTTACAACCTAGTGTTAAACACTTGGGGGCGCTATTAGCTTCCACTGCCAGATTCTGTGGGCCTGGTGTGCTGTAGATTGCTCAGGAAGGATGGGGAGACTTATGGGCAAGCTCTAAGATGCATCAGAAGTATTTGGCAAGGTATGGAAAGCTTAGACTGCATCACAGTTGTGCGCAAGTGTGTTTGTAAATTATAATGTCTGACACTGACTAGAGGGCCGCTTTGATCTCTGATCACTGATGGTCTTATGTGAACACCATCACTGCTAGCtcagctatgttttttttttttttgctttctgtaCGGACAGTGCCTAGCAGACACTTCGGTTCATACATGTAAGACAACTTTAATCTGGAGATTCATCGATATAGGAGATTTGGTGCAAGTCATGTAAGACCTGACTCCCTGGCTTCGATTATGACTTGAAGAGGTCACATCAGTACTGGTTTGGATATGAAAAACAACCAACAGACTAAGAACTAttattttgttctgttattaGTACCTTCAGCTGATATAAAATTATTTGTGATTTGGAGGCATTGGGATTTCTCATCCAGTGCTTTATTCAGATTGTTGACCTTGGTGGACAGCCCTGTCTGCTGGACCAGTTTGGATCCTTTTTGCCTTTTGGTAGTTTTCCCCAGCTTAGATAACGGTAGTGCTAGTTTTACAGGCCTACGCGTTTATTGTCCTGCTCCAGTTCTTGTTGCACTTGGAGctatgcaggtttttttttgtttttgtttgttgtctTTTGATGGGCTTGACTCAGTATGAATAAATGATCAGGTTAGTAATAACTAACAGCAGATTAAGTCAGTTGAAGGAGCTCTATGCATGTGGCTTACCTGTGTGTCTCACCTGGTATGAGGTGAGCACAGTGTACCTGAACTGTGTCCCTTCTACTGTGTTCAGACCACTGCGTTTGGAAGCATTACGTGAGGAAGTGCTAAGGTGTGTCAGTAGTTTCTCTAAGTGCTCCTTCGCCCCTTTTGTTATGTGTTTGatctattattaaaatgttgaatTGCAGATGAAGCCAGTATTATTGGCTAAGCATGTATGTTTTATGGCAACAACAATTGACTTTGGATTTTGGCAATAGAAGGCACTGTTGATTTAAAAGCTAGTTTGTGAGAAAAGGGGGTGCTGATGGCTTTTAGAATTAAAAGATAAGTCATTATTACATACAACCCACTAAAATACCAAACACCTTCCCATAACCTTGTGCacataatttacataatttacaaCCCTGTCCACCATACCTTTAGCACTGCATCATGCGTTACACTCAAGTTGTTCAAAACAAGCTAGGAAACCTCACAAGGCTGATTGCCTTGCTAAATAATGAGCATAATTTGCTCCCCTTTGTCCTCATAGAACCACAGTTTAATCAGTTTAGGTTTAAACCTTATCTACACATTGTAAACACAAACAGCTGCtacatttctttcattctcGTGTCATATTGTCTGCTTCTGTTTGCTCCAACCCACAAGCTCAAGAATATATAGCTATGTTCCTGCCTTATTTAATATGTGGCGTGCATACAGAATACAAACCTCCAAGATGTCGCTTGTCTCTTTCATAATTGTGTACAAGTGAACCCCTGATTTGTATTTTCTCCTGAAAGCCTTCCCAATTTCTTTATACATTAGGTCAACATTGTCTTTgaggaattaaaataataataataatgct
>XM_007240239.3
agttagctaagttagcttgtGGCGTTTTGAGCGCAGTGCGTCTGCTTTACTTTACGCGAGGCTGTTTGAGGGTGTTAGGCTCCGTTTTCCCCCTCAGAGCCCGAGCTGCGGTTTATTTCGTGAGGGACAGATAGTCAGCAGCAGCGGACGGGGTCAGAGAGTTGAGCCCCGGCTGGGCGGACAGTAGTTTTTCTTGTTTAAGGCGTTTCTGGGTCTGTTGTGTGGATTTGTCTGAGCGGCGGTGTGAAGTCTAGCCGGTGTAGTGTAGGGGCGCACTGGGCCCTGTGCTACTGTTAGCATAGCTGCGAGAGGACCGTCTCTAGGGCAGAATTCTGAGATTCAGCGCTGAAAAGGCGAAACGATGGATAAAGCGGATTTCCTGAAAGGTCTCCCTGTATACAACAAGACCAACTTCAGTAGATTCCATGCGGACTCTGTTTGCAAAGCATCGAATAGAAGACCGTCAGTATATCTGCCTACACGGGAATATCCCTCGGAGCAGATTATTGTTACAGAGAAAACAAATATTCTTCTGCGCTACCTTCATCAACAGTGGGACAAAAAgaaTGCAGCTAAGAAGCGGGAGCAGGAGCAGGGAGAAGGAGGAAGTCCTGCACCTCCACGCAAAATCGCCCGGACTGACAGTCAAGAAATGAACGAAGACTCCTAAATGGGATCGTTACCAAACAGCACAAGGACAGGCACAAAAATGACAGCCGTTTCAGAAGTTCATAATACCTTGTCTACATATTTATGTAGACACCTGCACATGAGACTGGAAtttacttaaagaaaaaaaaaacacaagaaagagATTGAAAGTGAGCAAGACCCTTTTTTATggtgtgcttttttatttttattaagcgCTTCCTGTCAACCTGTCTCCTTTTGTGTATCCTTACAACCTAGTGTTAAACACTTGGGGGCGCTATTAGCTTCCACTGCCAGATTCTGTGGGCCTGGTGTGCTGTAGATTGCTCAGGAAGGATGGGGAGACTTATGGGCAAGCTCTAAGATGCATCAGAAGTATTTGGCAAGGTATGGAAAGCTTAGACTGCATCACAGTTGTGCGCAAGTGTGTTTGTAAATTATAATGTCTGACACTGACTAGAGGGCCGCTTTGATCTCTGATCACTGATGGTCTTATGTGAACACCATCACTGCTAGCtcagctatgttttttttttttttgctttctgtaCGGACAGTGCCTAGCAGACACTTCGGTTCATACATGTAAGACAACTTTAATCTGGAGATTCATCGATATAGGAGATTTGGTGCAAGTCATGTAAGACCTGACTCCCTGGCTTCGATTATGACTTGAAGAGGTCACATCAGTACTGGTTTGGATATGAAAAACAACCAACAGACTAAGAACTAttattttgttctgttattaGTACCTTCAGCTGATATAAAATTATTTGTGATTTGGAGGCATTGGGATTTCTCATCCAGTGCTTTATTCAGATTGTTGACCTTGGTGGACAGCCCTGTCTGCTGGACCAGTTTGGATCCTTTTTGCCTTTTGGTAGTTTTCCCCAGCTTAGATAACGGTAGTGCTAGTTTTACAGGCCTACGCGTTTATTGTCCTGCTCCAGTTCTTGTTGCACTTGGAGctatgcaggtttttttttgtttttgtttgttgtctTTTGATGGGCTTGACTCAGTATGAATAAATGATCAGGTTAGTAATAACTAACAGCAGATTAAGTCAGTTGAAGGAGCTCTATGCATGTGGCTTACCTGTGTGTCTCACCTGGTATGAGGTGAGCACAGTGTACCTGAACTGTGTCCCTTCTACTGTGTTCAGACCACTGCGTTTGGAAGCATTACGTGAGGAAGTGCTAAGGTGTGTCAGTAGTTTCTCTAAGTGCTCCTTCGCCCCTTTTGTTATGTGTTTGatctattattaaaatgttgaatTGCAGATGAAGCCAGTATTATTGGCTAAGCATGTATGTTTTATGGCAACAACAATTGACTTTGGATTTTGGCAATAGAAGGCACTGTTGATTTAAAAGCTAGTTTGTGAGAAAAGGGGGTGCTGATGGCTTTTAGAATTAAAAGATAAGTCATTATTACATACAACCCACTAAAATACCAAACACCTTCCCATAACCTTGTGCacataatttacataatttacaaCCCTGTCCACCATACCTTTAGCACTGCATCATGCGTTACACTCAAGTTGTTCAAAACAAGCTAGGAAACCTCACAAGGCTGATTGCCTTGCTAAATAATGAGCATAATTTGCTCCCCTTTGTCCTCATAGAACCACAGTTTAATCAGTTTAGGTTTAAACCTTATCTACACATTGTAAACACAAACAGCTGCtacatttctttcattctcGTGTCATATTGTCTGCTTCTGTTTGCTCCAACCCACAAGCTCAAGAATATATAGCTATGTTCCTGCCTTATTTAATATGTGGCGTGCATACAGAATACAAACCTCCAAGATGTCGCTTGTCTCTTTCATAATTGTGTACAAGTGAACCCCTGATTTGTATTTTCTCCTGAAAGCCTTCCCAATTTCTTTATACATTAGGTCAACATTGTCTTTgaggaattaaaataataataataa

Function

symbol description
dda1 Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to act upstream of or within regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DDA1 (DET1 and DDB1 associated 1).

NR:

description
DET1- and DDB1-associated protein 1 isoform X1

GO: NA

KEGG:

id description
K11792 DDA1; DET1- and DDB1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU58309 False 2592 lncRNA 0.42 5 17012486 17017856
XM_007240239.3 True 2607 mRNA 0.42 5 17012467 17017852

Neighbor

gene id symbol gene type direction distance location
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 1942 16975644 ~ 17010525 (+)
plvap NA coding upstream 65490 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 75561 16931500 ~ 16936906 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding upstream 149306 16860122 ~ 16863161 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding upstream 155917 16852092 ~ 16856550 (+)
abhd8 abhd8 coding downstream 473 17018329 ~ 17027124 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding downstream 35555 17053411 ~ 17057107 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 229225 17247081 ~ 17253787 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 241509 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 284223 17302079 ~ 17307013 (+)
G43198 NA non-coding upstream 169462 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 224855 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 263789 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 289821 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 296672 16715560 ~ 16715795 (+)
G43233 NA non-coding downstream 12653 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 20715 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 40553 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 47491 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 58836 17076692 ~ 17080295 (+)
LOC111192574 NA other upstream 62107 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 193216 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 566180 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 1027835 15978486 ~ 15984632 (+)
G42605 NA other upstream 2113219 14895062 ~ 14899248 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 175682 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 615240 17633096 ~ 17768954 (+)
G43537 NA other downstream 994317 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 1105890 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 1127343 18145199 ~ 18152349 (+)

Expression


Co-expression Network