G43251 (ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547)


Basic Information

Item Value
gene id G43251
gene name ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17058409 ~ 17063971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58332
TTTATTGTAACTACAAAGAGGAGGAGACAGAGCTCAATCCAGAGCATCTCCTGAGAAGTTCTTCCAAGTACAACAAATGACCAccgttaaataaaacatttacaacaGCCAGAAACAAATCACTCGTGATCCCACTAGCCAGAAACCTCACTTCCGATACCAAATCCTCATTTTCTTTTCCCGCTTTATTTTCCTCTGAAGCTGCAGAGTTCCGTAAAGCAGAGCCTCTGCAGTGGGCGGGCAGCCTGGAACATAAATGTCTACAGGGACGATTCTGTCGCAGCCTCTGACCACTGAGTAGGAGTAGTGATAGTAGCCTCCACCATTAGCACAGCTTCCCATGGAAATCACGTATCTGGGCTCAGGCATCTGATCGTACCTTACGCAAAGCTGGGGCCATCTTATTGGTCAGTGTTCCTGCAACGATCATGACATCAGCCTGTCTAGGGCTGGCTCTGAACACAACGCCAAAACGATCCATATCGTAGCGTGGTGCAGCCATGTGCATCATCTCCACAGCACAGCATGCCAACCCAAAGGTCATTGGCCACAAGGAGCTCCTGCGTGCCCAGTTCACCAGGTCATCCAGCTTGGTAATAACATATTCACCCTTGCTGCTGACGGCTGAGGCTGGTTTGGTTGCCACAGCTGTGCTTTTCTCCCTGAACAGAACCAGGCTGAAAAGAGACATGACAAGTTTGTGTTACAGATCACAAGAACTACTGAAGCAGGTATCTTTAAAGGACTTAACCTATTTTCATGTAGGTTTTTCTCCCCCTATATGAGTGAATTGGGGCAAAATGTTGCGACACCCTTCAAAGCTAACAATgagtctttttaaaaatgatcacaATATGAGTTTTAG
>TU58333
AGGAAAGCATTTTATGGTATAAACAGCACATTACAGCCctaataaactttttaaaagatgtCTTTTCCCATACCTTCCCATGGAAATCACGTATCTGGGCTCAGGCATCTGATCGTACACTTACGCAAAGCTGGGGCCATCTTATTGGTCAGTGTTCCTGCAACGATCATGACATCAGCCTGTCTAGGGCTGGCTCTGAACACAACGCCAAAACGATCCATATCGTAGCGTGGTGCAGCCATGTGCATCATCTCCACAGCACAGCATGCCAACCCAAAGGTCATTGGCCACAAGGAGCTCCTGCGTGCCCAGTTCACCAGGTCATCCAGCTTGGTAATAACATATTCACCCTTGCTGCTGACGGCTGAGGCTGGTTTGGTTGCCACAGCTGTGCTTTTCTCCCTGAACAGAACCAGGCTTTAGCATCATCTTCATCTTTCTTGTTCTTGAGCACAGCCTTATTCTGAACAGCAAATGAAGAAAGTGGTCTTACTGAAAAGGTGCCAATTGAGGCAAGGCGAGGAGCAACCAGCGCCGCCATGGTTTC

Function

symbol description
ndufs7 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in aerobic respiration; electron transport coupled proton transport; and mitochondrial respiratory chain complex I assembly. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including eye; immature eye; musculature system; optic tectum; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 3. Orthologous to human NDUFS7 (NADH:ubiquinone oxidoreductase core subunit S7).

NR:

description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58332 True 865 lncRNA 0.46 5 17058409 17060901
TU58333 False 547 lncRNA 0.48 6 17060001 17063971

Neighbor

gene id symbol gene type direction distance location
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 1302 17053411 ~ 17057107 (+)
abhd8 abhd8 coding upstream 31285 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 47884 16975644 ~ 17010525 (+)
plvap NA coding upstream 111432 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 121503 16931500 ~ 16936906 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 183110 17247081 ~ 17253787 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 195394 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 238108 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 243637 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 1095586 18159557 ~ 18166817 (+)
G43248 dazap1 non-coding upstream 11300 17038571 ~ 17047109 (+)
G43233 NA non-coding upstream 27014 17030509 ~ 17031395 (+)
G43198 NA non-coding upstream 215404 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 270797 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 309731 16747826 ~ 16748678 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 1376 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 12721 17076692 ~ 17080295 (+)
G43254 NA non-coding downstream 16380 17080351 ~ 17083008 (+)
G43363 pex11g non-coding downstream 136326 17200297 ~ 17202840 (+)
G43382 NA non-coding downstream 208328 17272299 ~ 17275365 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 40553 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 108049 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 239158 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 612122 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 1073777 15978486 ~ 15984632 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 129567 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 569125 17633096 ~ 17768954 (+)
G43537 NA other downstream 948202 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 1059775 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 1081228 18145199 ~ 18152349 (+)

Expression


Co-expression Network