G43252 (LOC108435930,LOC107597167,LOC107757917,LOC107685268)


Basic Information

Item Value
gene id G43252
gene name LOC108435930,LOC107597167,LOC107757917,LOC107685268
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17065347 ~ 17072232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58334
tgtAAAATTTGAGTGGCAAATTTGAGGAAGGCATTTCAAAAGGTAAGTATCTGAAcataatgtacatttttaaagtgtcaTGTAAAAGCAGCGAGGGCAATAAATAGACAGCAACATGGGACAGTAAGTaaggattttaaaataaattgcacCTAATGTGTTCAATTAAAGCATACAACCTAAATTAGGTTCGTTCAAGGTAACACGGATaattaacaattatttttttctctagaaTTCTAAAAGTTCTTTTCGTcttgaaaaaatatatcttcAGCTTGCAAATTTGGCTATTGCAGTCCACTAttggaaaacagaaaaagaaaattgtaTTGCATGTTTAATATACCTTAAAAGCTGCGAAAATCAAACAGACCTGTTGTGGCTTCATTTATCAAGGATGCACCATTAGTGTCCTGTGATTTTAACAGCTACCAGCAGTTAACTGCTGAGGTTTCAAATAATGACATTGAGTTAACGTTTAAAATGAAAGTCAACATAATTCCCCCTTTAGCATGTACAGttaaaattatagtttaaaaaaatctaaacacttCAGTCTTCTGGCAAAACTGAGGAATTAATTAAAATGGGtacatccattaaaaaagatgACAATATTATGTACATCTATCAAAAGGACGGCACTATTGTTTacaggaaaaagaaaataaaacaacaacaaaagagaACACACAAAAAGGGCTTTAATCCTCAGTTAGCAGTCGATGAAAATGATCCGTCCTTCTCTTCAAAACAGCCCGGAAGTCGTCTGCTTGGACTAGTTTCTCCAGGTAAGGGATGAGTCTGTGGAGCTCCTTGTCATCCTTGTCTCCACTCCAGCTTTTTATGGGAATCATGTTCATCAGATGGTATGGGAACGTGTGAGGCGCGTTGTCCAGAATAACAGTTTTTGAAAGATCTCTTTCCAGCACTCCTAGGTCCTTAATATAGTGTCCAAGGACACATGCACAGTCATCCTGATACAAACGGTGCCTGAACAGTTTTTTCTTTGGGTCCAATATGTCCACAATCATTTCTGCATATTCCCTTTTAGCAGAGGTGTAAATAAACATCTCAAAGTGCTTTGCCATTGCTTGTAGAAACTCTGTCACATATGGTCTGAGAACCACATACACCTTGTACTCTTGGTCTTGGAAGCACGTGTTAAATGTGTGCTCAGCATCCTCAATCATATTGAGTGAGCTGAACACTAGTGTTTcatccaAGTCAAGAACCATAGTGGCTGCAGGTGTGCTCCTTGTCTTTGGTGGTATGTCACGGAGAGCAGAGACTGACCTAGACTGCTGAGACTGATTTGGAATGTTTTTGATGAATGTAAATgGGCTAAACACTTCATCATTTTCCTCATCTTCAGAGAGAGGGCCAGTGGAGCTGTagccaaacacacactgttcaGGGCTGAACACAGAGCGACTGCTGGACCTTTCATGGTCTTTGGTGGGAGTGAGGAAACGCACTATGGGAGAGTAGAGACTGCGTGCTGCACGATTGACGGATGCGGGATGTCTCTCTCTGCGATGGCGGACTGGTGTCTTGAAATCAGACTCTTTACACTCAACAGGTATAGCCCTTGGCCTCCCGCGTTTTAAGCGTGGACGCTTTGCTGCAGTTGGGACAGCATCGCAATACAAGTTTGAGCAGTCCTGTAAAACCTCATGCACCTCCTCAGGGCGGCTTTGCTCGATCCGCGGAACTCGATTCAAATCCGCCCGGCGGCGACACGGAGTCCTCGGTTGATTCGACGGGCTGTCCAGAGAAATAATCCGCGACCTTAGTTTCATCTTCGCGTTGTTTATTTAACCGCGTTGTTAACTAATGAATAGACATCTGTACTGAAGGTTTAGCGCCGTTCCTGAATCAATTTCTGATCCCAGACTCGCTctgttaatgttatttttgaCTGCAGTC
>TU58335
tgtAAAATTTGAGTGGCAAATTTGAGGAAGGCATTTCAAAAGGTAAGTATCTGAAcataatgtacatttttaaagtgtcaTGTAAAAGCAGCGAGGGCAATAAATAGACAGCAACATGGGACAGTAAGTaaggattttaaaataaattgcacCTAATGTGTTCAATTAAAGCATACAACCTAAATTAGGTTCGTTCAAGGTAACACGGATaattaacaattatttttttctctagaaTTCTAAAAGTTCTTTTCGTcttgaaaaaatatatcttcAGCTTGCAAATTTGGCTATTGCAGTCCACTAttggaaaacagaaaaagaaaattgtaTTGCATGTTTAATATACCTTAAAAGCTGCGAAAATCAAACAGACCTGTTGTGGCTTCATTTATCAAGGATGCACCATTAGTGTCCTGTGATTTTAACAGCTACCAGCAGTTAACTGCTGAGGTTTCAAATAATGACATTGAGTTAACGTTTAAAATGAAAGTCAACATAATTCCCCCTTTAGCATGTACAGttaaaattatagtttaaaaaaatctaaacacttCAGTCTTCTGGCAAAACTGAGGAATTAATTAAAATGGGtacatccattaaaaaagatgACAATATTATGTACATCTATCAAAAGGACGGCACTATTGTTTacaggaaaaagaaaataaaacaacaacaaaagagaACACACAAAAAGGGCTTTAATCCTCAGTTAGCAGTCGATGAAAATGATCCGTCCTTCTCTTCAAAACAGCCCGGAAGTCGTCTGCTTGGACTAGTTTCTCCAGGTAAGGGATGAGTCTGTGGAGCTCCTTGTCATCCTTGTCTCCACTCCAGCTTTTTATGGGAATCATGTTCATCAGATGGTATGGGAACGTGTGAGGCGCGTTGTCCAGAATAACAGTTTTTGAAAGATCTCTTTCCAGCACTCCTAGGTCCTTAATATAGTGTCCAAGGACACATGCACAGTCATCCTGATACAAACGGTGCCTGAACAGTTTTTTCTTTGGGTCCAATATGTCCACAATCATTTCTGCATATTCCCTTTTAGCAGAGGTGTAAATAAACATCTCAAAGTGCTTTGCCATTGCTTGTAGAAACTCTGTCACATATGGTCTGAGAACCACATACACCTTGTACTCTTGGTCTTGGAAGCACGTGTTAAATGTGTGCTCAGCATCCTCAATCATATTGAGTGAGCTGAACACTAGTGTTTcatccaAGTCAAGAACCATAGTGGCTGCAGGTGTGCTCCTTGTCTTTGGTGGTATGTCACGGAGAGCAGAGACTGACCTAGACTGCTGAGACTGATTTGGAATGTTTTTGATGAATGTAAATgGGCTAAACACTTCATCATTTTCCTCATCTTCAGAGAGAGGGCCAGTGGAGCTGTagccaaacacacactgttcaGGGCTGAACACAGAGCGACTGCTGGACCTTTCATGGTCTTTGGTGGGAGTGAGGAAACGCACTATGGGAGAGTAGAGACTGCGTGCTGCACGATTGACGGATGCGGGATGTCTCTCTCTGCGATGGCGGACTGGTGTCTTGAAATCAGACTCTTTACACTCAACAGGTATAGCCCTTGGCCTCCCGCGTTTTAAGCGTGGACGCTTTGCTGCAGTTGGGACAGCATCGCAATACAAGTTTGAGCAGTCCTGTAAAACCTCATGCACCTCCTCAGGGCGGCTTTGCTCGATCCGCGGAACTCGATTCAAATCCGCCCGGCGGCGACACGGAGTCCTCGGTTGATTCGACGGGCTGTCCAGAGAAATAATCCGCGACCTTAGTTTCATCTTCGCGTTGTTTATTTAACCGCGTTGTTAACTAATGAATAGACATCTGTACTGAAGGTTTAGCGCCGTTCCTGAATCAATTTCTGATCCCAGACTCGCTctgttaatgttatttttgaCTGCAGTC

Function

NR:

description
PREDICTED: CTD small phosphatase-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58334 True 1932 lncRNA 0.41 11 17065347 17072232
TU58335 False 1932 lncRNA 0.41 11 17065347 17072232

Neighbor

gene id symbol gene type direction distance location
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 8240 17053411 ~ 17057107 (+)
abhd8 abhd8 coding upstream 38223 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 54822 16975644 ~ 17010525 (+)
plvap NA coding upstream 118370 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 128441 16931500 ~ 16936906 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 174849 17247081 ~ 17253787 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 187133 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 229847 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 235376 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 1087325 18159557 ~ 18166817 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding upstream 1376 17058409 ~ 17063971 (+)
G43248 dazap1 non-coding upstream 18238 17038571 ~ 17047109 (+)
G43233 NA non-coding upstream 33952 17030509 ~ 17031395 (+)
G43198 NA non-coding upstream 222342 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 277735 16786571 ~ 16787612 (+)
G43253 NA non-coding downstream 4460 17076692 ~ 17080295 (+)
G43254 NA non-coding downstream 8119 17080351 ~ 17083008 (+)
G43363 pex11g non-coding downstream 128065 17200297 ~ 17202840 (+)
G43382 NA non-coding downstream 200067 17272299 ~ 17275365 (+)
LOC111192514 NA non-coding downstream 378808 17451040 ~ 17478044 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 47491 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 114987 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 246096 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 619060 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 1080715 15978486 ~ 15984632 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 121306 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 560864 17633096 ~ 17768954 (+)
G43537 NA other downstream 939941 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 1051514 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 1072967 18145199 ~ 18152349 (+)

Expression


Co-expression Network