G43537


Basic Information

Item Value
gene id G43537
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18012173 ~ 18014499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58763
ttattgctattaaacttaaaaatcaTCACCCGGAATAAAAAAATTCCAGGCATAAAATGATATTTGGCATTGTGAAATGAAGCTAAAGGAGAAATAAATGGTTTTATTAGCATAGACTTATCATGATCTTCATattctttagaaaaaaaacatgttgcaTGGCAAAGGATACTGTTTCTggagaaaacaacaaaataaaaccaaacaaacaaacaaaaaaacgacAACAATCAGCCCGCAGATTTTAGCATTTACAGGGACACATTCTACCTGAATATGAACTACTGGGAGCTTCCTCCAATTCTTACAATTCTAACACTACCTACTGTCATACAGAGCATTCTATTTAATTAGTAACAAGTCTTTTTAACACATTACTGGTTGTGCTTAGTGTTGGCACGCCACAGTCTGCGCTGGCACTTGCATGAGGGCTGACAAAATATAGGGGCATAGCTGCTAAAACACCAACATGGCagttagttatttttattttttttatctctatcTAGATACAAAGCAAAGCTCTGCAGTTAGTACTAACTTCATTCATCATTTCATTTTTCAATTCATAATCATTCCAATAAACCAAATACTTTtctaaaatgcaataaaaaaaatcctattatacatatatacttataataataaacacaactgacaatgcaatgttttaaaatcttaaatcaGTAGTGTAACGTGTGTAAACCGAAAGacatcttaaataaaataaatagaatcaCATAAATAAATTCAAGTATTTCTGATGTGCAGTCGTTTCCTCTTCGTCAGCAAACGTCAGCGCACAACTTTTAAAGGACTGTATCTAAACATGCACAAACGAGCGCCGCTGCGCTATCGGCCGCAGAGCCGCAGGACGGAAGCTTCGCCCCGACCGCAGGGATGCATATCAAACACGACATTCACTGAGGTTAAGATTGGCTCATTATTACatgactgaaaacaaaaaaaagccaatTTAAAGAACAAGGGAAGCCTTACAAAAAAACTTATCAGGAGAGAATTTGGCCtttccgaaaaaaaaaaaaaagagcaaagccaccttaaaaaaacaatCCTCTGTGCTGATATTCTTGAACTGCTTTCAAgataaatatgcattaaaactatgataaaaagtaatgtaaagtgacagtaaaaaattaagaataaaagatTAAAGCATATCGGACTAGGCATGAATGCAAAATCATTCAAgtcaaataaaaagaataaaaaagaaacagcaacAAAAGCTTGCAAACATATCATCATAcaatatcatcattattatcatcatcgtcatcattttaatcatcatcaatataatcagcagtagcagcagcagtaaaaaaaaaaaaaaaaaaaacgaaaaacagtagttttttttttttttttttaggtttggcTTTCATCATTGACAAACGGCATACGCACTAAATCCATTCCGTCTACATTTCACTGAAGCATTCACTTATTTTAATGAAGTTATTGGTGGAATTATTTCGCAGTCTCGGGCACGGATCCGAAGAAGGGCGAAGTGTTATTTTACAGTATCAGTATGGGCGATCACTGTACAGCAGACGGCTATTTTACAGCAGATCCACAGGGAAAGACCGAGCTGGAGGGAGAGAGACTGCCTAATCGTCTGCATCTGATGTGCCAACAAACGCGAACTAACGGGGCGGACTGGCAAATCCCTTTTCATATGCTTCCAGAGTTAGCGTGGCTCCCATGAGGAGGAGGGTTGGAGAGGGAAGGGAGAGGGGGGGTGGTGTCGGCGGTTAGCTGCGGTGCGGTGAGAGGAATCGAATCCGGTCCCCTTTTCCTCCTCGGGAGGCAGCGAGGGACCCGGCGGAGCATCAGAAGTGGCCCATGCGGGTGGTGAAGAGGCTACGAGAGCGCGGCGCGGCGGCGGAGGCCACGTTCCGGCCAAAGCTGGAGGAAGGCCACTTGATGATGAACTGGGAGGTCACTGGCAGCAGATACCTGCACAGACGGAGACGGGGGGGAAGAGGGAAAGGGGGTTTGGATGGGAGACCGCAGGAGGAGGCAGGATTAGAGCTGCAAAAGGTCGTGCAAAGAGATCAGGCAGCATTAACCCGGCCCTGCAATCtgacacagaaaacaaaacccACCCGCTTGCCCACCCGCCTGGACGGACGGATGGACGGGCGTCCACCTTCTTCTCTCATCCCTGCAACCATCCCATCAGCCCCATACTGTCCGACATCCTTTCGGacaccctccctccctccttccctccctctcctGCTTCCCCCTTGATCCCTCCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58763 True 2294 TUCP 0.42 2 18012173 18014499

Neighbor

gene id symbol gene type direction distance location
lsm4 lsm4,LOC107680485 coding upstream 701916 17307608 ~ 17310257 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding upstream 705160 17302079 ~ 17307013 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding upstream 742647 17259365 ~ 17269526 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding upstream 758386 17247081 ~ 17253787 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 955066 17053411 ~ 17057107 (+)
dnase2b NA coding downstream 145058 18159557 ~ 18166817 (+)
rpf1 rpf1 coding downstream 155194 18169693 ~ 18175127 (+)
ctbs ctbs coding downstream 162448 18176947 ~ 18181454 (+)
LOC111192515 NA coding downstream 184840 18199339 ~ 18203357 (+)
LOC103045882 NA coding downstream 224755 18239254 ~ 18246244 (+)
G43483 NA non-coding upstream 256016 17755308 ~ 17756157 (+)
G43414 NA non-coding upstream 525362 17483676 ~ 17486811 (+)
LOC111192514 NA non-coding upstream 534129 17451040 ~ 17478044 (+)
G43382 NA non-coding upstream 736808 17272299 ~ 17275365 (+)
G43363 pex11g non-coding upstream 809333 17200297 ~ 17202840 (+)
G43561 uric,LOC103030682,LOC108430123,LOC100136464,LOC105895190,LOC103392251,LOC102300275,LOC102208991 non-coding downstream 138361 18152860 ~ 18157853 (+)
G43564 NA non-coding downstream 152384 18166883 ~ 18167890 (+)
G43567 NA non-coding downstream 168691 18183190 ~ 18183786 (+)
G43574 ssx2ip non-coding downstream 234955 18249454 ~ 18251731 (+)
G43638 clcc1 non-coding downstream 298274 18312773 ~ 18313342 (+)
adgrl2 adgrl2 other upstream 243219 17633096 ~ 17768954 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other upstream 816057 17193538 ~ 17196116 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 994317 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 1061813 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 1192922 16816601 ~ 16819251 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 109247 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 130700 18145199 ~ 18152349 (+)
G43568 LOC108270632,LOC108261872 other downstream 172540 18187039 ~ 18240232 (+)
p3h2 p3h2,LOC107560692,LOC107564922,LOC107664742 other downstream 1708103 19722602 ~ 19790148 (+)
G43923 NA other downstream 1794243 19808742 ~ 19864143 (+)

Expression


Co-expression Network