G43568 (LOC108270632,LOC108261872)


Basic Information

Item Value
gene id G43568
gene name LOC108270632,LOC108261872
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18187039 ~ 18240232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU58814
GGTTAcgggaacactcagggttcctcagtgtagcacagtCGGGtgacatttactagcgctaagcgctgctgCTAAGTGCTGCTGCTAAGTGCTGCTGCTTATAACAgccagtgctgctgctaactgctgtTTCAAaccgctgctgctaaccacaaccAGTGCTTCTAACCGCTGCTGCTAATTGCTGTTgcaaactgctgctgctaaccgtcgCGGCTAACGCAGGTCCAGTCCATCtacatatatgtgtttttctacAAGAGTTaattccgacctcacaatctgattggttgagaagtgctCTAACCGTGCTGATATGGATCACTCCGCAGACGCGTTTCCGAGTAACGGCATATACTTACAAGACATATTTGTATCATCACCTTcaccagcagcattagcttagcataggcTAGCCCCCAGCCaaggcacgctcgcccgcaccTCAAACCACCAGCCATGAGAGCTGTTGTGCTTGCACTGACTGTGGCCCTTGTGGCAAGTCAACAGATCAACCTTGTTCCAGAGTTTGCCGCTGGTAAGACCTATGTATACAAGTATGAGGGTCTGCTGTTGGGCGGTCTGCCTCAGGAGGGTCTGGGCAAGGCTGGTGTAAAAGTCAGCAGCAAGGTTCTCATCAGGGCTGAAGCATCGACCACCTTCCTTCTGAAGCTCCAGGATCCTCAACTCTTTGAGTATGCCGGCATCTGGCCTCAGGATTCTTTTAGCCCCGCTGCAAAGCTCCTCGCCGCCCTGAACGCTCAGCTTCAAATTCCCATCAAATTTGAGTATGCTAATGGTGTGGTTGGTAAGATTTATGCCCCTGCTGGAGTGTCTGCTACTGTCCTGAACTTGTACAGAGGAATCCTCAACATCCTTCAGCTCAACCTCAAGAACACCCAGAATGTCTATGAGATGCATGAggCTGGAACTCATGGAGTCTGCAAGGCCCACTATATGATCAGTGAAGAGCAAAGACCCA

Function

NR:

description
PREDICTED: vitellogenin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58814 True 982 TUCP 0.51 5 18187039 18240232

Neighbor

gene id symbol gene type direction distance location
ctbs ctbs coding upstream 5585 18176947 ~ 18181454 (+)
rpf1 rpf1 coding upstream 11912 18169693 ~ 18175127 (+)
dnase2b NA coding upstream 20222 18159557 ~ 18166817 (+)
lsm4 lsm4,LOC107680485 coding upstream 876782 17307608 ~ 17310257 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding upstream 880026 17302079 ~ 17307013 (+)
ddx59 ddx59,LOC107717990 coding downstream 149841 18390073 ~ 18405402 (+)
kif14 kif14 coding downstream 166328 18406560 ~ 18423568 (+)
LOC103036603 NA coding downstream 185682 18425914 ~ 18523705 (+)
dennd1b LOC106560563 coding downstream 758396 18998628 ~ 19165059 (+)
aspm aspm,LOC108417164,LOC104953288,LOC105905271 coding downstream 969109 19209341 ~ 19233958 (+)
G43567 NA non-coding upstream 3253 18183190 ~ 18183786 (+)
G43564 NA non-coding upstream 19149 18166883 ~ 18167890 (+)
G43561 uric,LOC103030682,LOC108430123,LOC100136464,LOC105895190,LOC103392251,LOC102300275,LOC102208991 non-coding upstream 29186 18152860 ~ 18157853 (+)
G43483 NA non-coding upstream 430882 17755308 ~ 17756157 (+)
G43414 NA non-coding upstream 700228 17483676 ~ 17486811 (+)
G43574 ssx2ip non-coding downstream 9222 18249454 ~ 18251731 (+)
G43638 clcc1 non-coding downstream 72541 18312773 ~ 18313342 (+)
G43675 NA non-coding downstream 223694 18463926 ~ 18464608 (+)
G43672 NA non-coding downstream 283542 18523774 ~ 18526441 (+)
G43739 NA non-coding downstream 494425 18734657 ~ 18734937 (+)
samd13 samd13,LOC107592550 other upstream 34690 18145199 ~ 18152349 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other upstream 43500 18123746 ~ 18143539 (+)
G43537 NA other upstream 172540 18012173 ~ 18014499 (+)
adgrl2 adgrl2 other upstream 418085 17633096 ~ 17768954 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other upstream 990923 17193538 ~ 17196116 (+)
p3h2 p3h2,LOC107560692,LOC107564922,LOC107664742 other downstream 1482370 19722602 ~ 19790148 (+)
G43923 NA other downstream 1568510 19808742 ~ 19864143 (+)
LOC103046190 LOC103046190,LOC108438766 other downstream 1633066 19873298 ~ 19904344 (+)
G44070 dot1l,LOC107729667 other downstream 1890875 20131107 ~ 20137056 (+)
G44287 NA other downstream 3729867 21970099 ~ 22030891 (+)

Expression


Co-expression Network