G46396


Basic Information

Item Value
gene id G46396
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9103550 ~ 9103860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52760
TTTTAATGAAATCTGAGAGGTTTTTTTATCTCCAATAGAAAGCAACGAAATTACTACATTCAAGGTCCAGGAAAGTAATAAAGACATCGTTAAAATAGTCAACGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCAAGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAATGACTTTATTCAACAATTTCCTCTCTACCATGTCATTCTCCTACGCAGTTTACATTGAAGACACATTGCAGAGCTTCCATGTTTTACATCAGAATGCTAACTCTGTACTGCCCGGCTCCTTTGTCAGCATCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52760 True 311 lncRNA 0.38 1 9103550 9103860

Neighbor

gene id symbol gene type direction distance location
CI01000006_09019351_09023876 STOM coding downstream 79674 9019276 ~ 9023876 (-)
CI01000006_08866054_08871468 NA coding downstream 232082 8866019 ~ 8871468 (-)
CI01000006_08831292_08836066 NA coding downstream 266932 8830955 ~ 8836618 (-)
CI01000006_08797043_08827629 RXRA, RXRAA coding downstream 275864 8796836 ~ 8827686 (-)
CI01000006_08780644_08787820 NA coding downstream 315730 8780117 ~ 8787820 (-)
CI01000006_09161066_09181709 TSC1B, TSC1 coding upstream 57067 9160927 ~ 9181709 (-)
CI01000006_09197554_09198425 NA coding upstream 93415 9197275 ~ 9198425 (-)
CI01000006_09205576_09277358 BCR coding upstream 101716 9205576 ~ 9278154 (-)
CI01000006_09282220_09315540 ATP2A2.S, ATP2A2, ATP2A2A, ATP2A2B coding upstream 176995 9280855 ~ 9316496 (-)
CI01000006_09326410_09330229 ARPC3, ARPC3.L coding upstream 222370 9326230 ~ 9330262 (-)
G46257 NA non-coding downstream 6845 9096459 ~ 9096705 (-)
G46208 NA non-coding downstream 77299 9024139 ~ 9026251 (-)
G46076 NA non-coding downstream 86579 9014131 ~ 9016971 (-)
G46102 NA non-coding downstream 95341 8999093 ~ 9008209 (-)
G46199 NA non-coding downstream 126679 8976671 ~ 8976871 (-)
G46410 NA non-coding upstream 29449 9133309 ~ 9133761 (-)
G46419 NA non-coding upstream 40592 9144452 ~ 9144757 (-)
G46420 NA non-coding upstream 41396 9145256 ~ 9145485 (-)
G46428 NA non-coding upstream 53838 9157698 ~ 9157931 (-)
G46439 NA non-coding upstream 246199 9350059 ~ 9350304 (-)
CI01000006_07500281_07507754 NA other downstream 1592594 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 2126678 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 4541482 4559509 ~ 4562068 (-)
G43549 NA other downstream 4748122 4352510 ~ 4355428 (-)
G43102 NA other downstream 6169566 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 1378996 10453613 ~ 10484006 (-)
G47658 NA other upstream 1927051 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 2546503 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 3230549 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 3246899 12569205 ~ 12582487 (-)

Expression


Co-expression Network