G46316


Basic Information

Item Value
gene id G46316
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9189983 ~ 9197387 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52678
CAGTTTTCATTTTAATATTAGAAATGTTGCAATGGGAACTAACTGAAGTTAGTTTAAGTTGAAGCACTAAAATGACTTAAACTGAAGCTATATAGAAAAATTAAAAAAAAAAAAAAAACGCATGACAAAAGCAACAAAATTACTAAAATTAAAATGAAAACTGAAAATATAAAAACTGAAAATATTCATAAATGCTAAAATATTATATAAATAACATCAAAATAACACCTCTGTAACATTTTTTCTTCTGCGAAAACACAAAAGAAGATATTTGGAAGAATGTTTTTTCCTATACAATGAAAGTCGTTTTTCAAAATACCACAGAAGAAAGTAAGTCACACAGGTTTGGAATGACATGAGGGTGAGTAAATGATGACAAAATCTTTATTAAGACCTTTTTCGAAATGACTTTCTTTATTTTAGCCAATAATCCATCAAAACTGTAACCTGACAAGCAGAAAACCCGTCCATCAACTGATTAAAATGTCCATTTTAACTATGAAATCATACCAGGTACAGCATCCGCATGCTAGGTACAGCCACTATGAAGGAGTCTAAACATATTTTTCATTTTCTTTTATTTTAGTATAAAAAGTAGTAAGATTGTATGGTAATGTTTAGATTGAAGTTTTTTTCTTTTGTTGTGTTATTTATAGAAATTCTTGTCACAAAAATAGTGCTAAATAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU52678 True 689 lncRNA 0.27 2 9189983 9197387

Neighbor

gene id symbol gene type direction distance location
CI01000006_09107491_09114820 GTF3C4 coding upstream 74912 9106826 ~ 9115071 (+)
CI01000006_09105004_09106470 NA coding upstream 83020 9104215 ~ 9106963 (+)
CI01000006_09098943_09103197 NA coding upstream 85811 9098682 ~ 9104172 (+)
CI01000006_09066050_09070383 BARH1, BARHL1B, BARHL1 coding upstream 119402 9065962 ~ 9070581 (+)
CI01000006_09004949_09014310 GSNA, GSN coding upstream 175394 9004674 ~ 9014589 (+)
CI01000006_09320331_09321778 UB2G1, UBE2G1A, UBE2G1, UBE2G1B coding downstream 122944 9320331 ~ 9321778 (+)
CI01000006_09334843_09337295 FAM216A coding downstream 137414 9334801 ~ 9337403 (+)
CI01000006_09497508_09511925 NA coding downstream 299419 9496806 ~ 9512720 (+)
CI01000006_09569228_09574340 NA coding downstream 370893 9568280 ~ 9575061 (+)
CI01000006_09712289_09783579 UNC5DA coding downstream 514902 9712289 ~ 9783579 (+)
G46296 NA non-coding upstream 31077 9158577 ~ 9158906 (+)
G46288 NA non-coding upstream 42091 9147671 ~ 9147892 (+)
G46284 NA non-coding upstream 48323 9141430 ~ 9141660 (+)
G46267 NA non-coding upstream 87527 9102035 ~ 9102456 (+)
G46256 NA non-coding upstream 94388 9095203 ~ 9095595 (+)
G46325 NA non-coding downstream 21064 9218451 ~ 9225417 (+)
G46273 NA non-coding downstream 82938 9280325 ~ 9326518 (+)
G46360 NA non-coding downstream 153811 9351198 ~ 9351415 (+)
G46371 NA non-coding downstream 180672 9378059 ~ 9378334 (+)
G46383 NA non-coding downstream 218633 9416020 ~ 9416289 (+)
G45416 NA other upstream 355286 8818814 ~ 8834697 (+)
G45355 NA other upstream 977595 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 989838 8197881 ~ 8200145 (+)
G45336 NA other upstream 1168032 8019342 ~ 8021951 (+)
G45265 NA other upstream 1269628 7883867 ~ 7920355 (+)
G46652 NA other downstream 959192 10156579 ~ 10159251 (+)
G47145 NA other downstream 1287971 10485358 ~ 10511806 (+)
G47159 NA other downstream 2218842 11416229 ~ 11521703 (+)
G47318 NA other downstream 2426880 11624267 ~ 11638252 (+)
G48094 NA other downstream 3080233 12277620 ~ 12279541 (+)

Expression


Co-expression Network