G46278


Basic Information

Item Value
gene id G46278
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9190362 ~ 9283895 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52636
GTTTCGATCCATCGACCTCTGGGTTATGGGCCCAGCACGCTTCCGCTGCGCCACTCTGCTGGACAGCGGTTGAGGTAAAAACAATCACTCTTAATGATAATGACTCTTGCACATCGGCCTACAACAGTCAAAATCAATTATGAAATTCTTGCGATAACAGAATTCGCGATTCTGAGTGAAAAGTTAAATTACCTCAGGTAATTTAGATTCTGAGTGAACTAGCCAGTCAAAAATAGCTAGTTAACCTAATTTAGTGCATATTTGAGCTCTCAGCAGACGTTCACTATTTTTATACGGTGAAGGAAAGCTAGTAAAAAAAAAGAAAGAAAAAAGAAAAAAAAAATTATATTTCTATCTTAAGGTTATTTTTGTGTTAATCCTGTCCTTCTCGTACACATTCGCTGTTTGCGGAGGCACACTTTAAACGCACAACCACACATACAGACATACGTACACACCATCTACACACATCTGTGCTCATTTCAGTCAAGACCAGAACATTTCGGCCAAGTTAGTGTCAGTGCTGTAGAGCCACAGCACCAGGGGGAGTGAAAGGGCCACAAAGGGCCAGGAAATGCCCTCCGTGCAGGTGCTGAGTGAGCATGCCATGCCCTTGGGCTTGTCCAGGTCTTTGGGCTTGTCCAGGTAGTTTCTGGCCACAAACTTGAGCAATTCATCCAGCAAGATGACGGGCAGGGAAATCTTCAACACCATAAGCCACTGGGTCACGTTCAGTGGAGTGATCTGGAAGATCATCTGTAGAGAAAGCCCAGGGTAGAGTCACTACACAAAGTAAATACTAGGGATGTGCCCGAAGCCTAATTCTAAGTAGTCGTTACATTACAGTACATCAGATTTCACTTATCTTGAGAAGATAGTAAGGAGAGATGACTGACAGGATGATGGCAGAGGATTTGTTGTGCAACAGATCCTGAGCATCATTGA
>TU52637
AAAAAGACTTAAAACAGATTTGTTAGGGCCAAAAGAATCTGAGTTTTCAAATAGAGGCACACCTCATGCAGTAATGTGTACAAGCGGTGTAAAGCTAAGTGGGGGGAGGAAGCAACCAGAGAGAGTCGAATCTGACAGTCCTGAGGTAGCTGTACTCTGCCTAGTGCAGAAAAACTGGCTTTACTAATCAAAAGTGTCAGGTAATAGTGGAAACAAAATGTATCACCATAAAAAAAATGGAAGTTATTACACATAGGGAAAGACATACAGGTACAAATCATACATGAAAAACCACACAAAATGCATGCGAAATACATAACATGCAGTTTTCATCTGAGAATTTGACCGTGAAGCATTCAAACATTCAGTCCCATACTCTCTTTCCCATGCTGCTTTGCAACACCATGCTTGTCCATTGGCTCGGAGCGATGTTCACGCCGAAGACACAAAGGTAAACATTAGTAAACAGTTCTTCTGTCTTGTTCTTTCTTTCTCTTTTTCTACCCTACCCACTCTACTCTGTTAGCAAAATAAACAAATAATAACAAATGAACAACTGCATAAAATAGTGTTAAATGTCTGTACACAAGCACTTTTCTCCATTCAGCAATTTGAACACATGATATGGGGGGGGAAACAAAGTGGATATTACCATTATTGATACTGTTTTGAAATGAGACGAGACAAATGATTAATTAAAAATGCAATAACAAAAGACTGCTTTCAAAAGAAACCAACAAGAAGTCCAAAAAATTATTAATGGTCACTAATACTTGAAGACTTCAGGTCTGTACGGTCTCTTCAATCACCAACGGACAGTTAAAAAAAAAAAAAGAAAAAAGAAAAGAAAAAAAAAATTATATTTCTATCTTAAGGTTATTTTTGTGTTAATCCTGTCCTTCTCGTACACATTCGCTGTTTGCGGAGGCACACTTTAAACGCACAACCACACATACAGACATACGTACACACCATCTACACACATCTGTGCTCATTTCAGTCAAGACCAGAACATTTCGGCCAAGTTAGTGTCAGTGCTGTAGAGCCACAGCACCAGGGGGAGTGAAAGGGCCACAAAGGGCCAGGAAATGCCCTCCGTGCAGGTGCTGAGTGAGCATGCCATGCCCTTGGGCTTGTCCAGGTCTTTGGGCTTGTCCAGGTAGTTTCTGGCCACAAACTTGAGCAATTCATCCAGCAAGATGACGGGCAGGGAAATCTTCAACACCATAAGCCACTGGGTCACGTTCAGTGGAGTGATCTGGAAGATCATCGGCAGGGGCTCCACGTAAAGGATAAAGAAGTGGAGGGACATGGAGAGGCAGATGGCTCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52636 False 945 lncRNA 0.44 2 9190362 9282678
TU52637 True 1332 lncRNA 0.41 2 9281220 9283895

Neighbor

gene id symbol gene type direction distance location
CI01000006_09107491_09114820 GTF3C4 coding upstream 75291 9106826 ~ 9115071 (+)
CI01000006_09105004_09106470 NA coding upstream 83399 9104215 ~ 9106963 (+)
CI01000006_09098943_09103197 NA coding upstream 86190 9098682 ~ 9104172 (+)
CI01000006_09066050_09070383 BARH1, BARHL1B, BARHL1 coding upstream 119781 9065962 ~ 9070581 (+)
CI01000006_09004949_09014310 GSNA, GSN coding upstream 175773 9004674 ~ 9014589 (+)
CI01000006_09320331_09321778 UB2G1, UBE2G1A, UBE2G1, UBE2G1B coding downstream 36436 9320331 ~ 9321778 (+)
CI01000006_09334843_09337295 FAM216A coding downstream 50906 9334801 ~ 9337403 (+)
CI01000006_09497508_09511925 NA coding downstream 212911 9496806 ~ 9512720 (+)
CI01000006_09569228_09574340 NA coding downstream 284385 9568280 ~ 9575061 (+)
CI01000006_09712289_09783579 UNC5DA coding downstream 428394 9712289 ~ 9783579 (+)
G46296 NA non-coding upstream 31456 9158577 ~ 9158906 (+)
G46288 NA non-coding upstream 42470 9147671 ~ 9147892 (+)
G46284 NA non-coding upstream 48702 9141430 ~ 9141660 (+)
G46267 NA non-coding upstream 87906 9102035 ~ 9102456 (+)
G46256 NA non-coding upstream 94767 9095203 ~ 9095595 (+)
G46360 NA non-coding downstream 67303 9351198 ~ 9351415 (+)
G46371 NA non-coding downstream 94164 9378059 ~ 9378334 (+)
G46383 NA non-coding downstream 132125 9416020 ~ 9416289 (+)
G46470 NA non-coding downstream 162550 9446445 ~ 9446677 (+)
G46483 NA non-coding downstream 186487 9470382 ~ 9484816 (+)
G45416 NA other upstream 355665 8818814 ~ 8834697 (+)
G45355 NA other upstream 977974 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 990217 8197881 ~ 8200145 (+)
G45336 NA other upstream 1168411 8019342 ~ 8021951 (+)
G45265 NA other upstream 1270007 7883867 ~ 7920355 (+)
G46652 NA other downstream 872684 10156579 ~ 10159251 (+)
G47145 NA other downstream 1201463 10485358 ~ 10511806 (+)
G47159 NA other downstream 2132334 11416229 ~ 11521703 (+)
G47318 NA other downstream 2340372 11624267 ~ 11638252 (+)
G48094 NA other downstream 2993725 12277620 ~ 12279541 (+)

Expression


Co-expression Network